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Information for unigene UN24936
| FASTA Sequence |
| Unigene ID: UN24936 | Length: 1003 |
SSR | | GGTCGAGAATCAAAAGAAAAAGCTTATAGTATACTTCATGACTTGTGCTTCTGTTGATTACTGGGGACTCGTGCTTTCGAAAATCC
CTGTCCTGAAGTCCATATCTTTAATCCCTATCCATGGGGATATGAAGCAGAATGCAAGAGACAAGGCCTTAGCTTCGTTTACTGAG
GCATCAAGCGCTGTCCTTTTGTGCACTGATGTCGCTGCACGTGGACTTGATATTCCAGGCATTGATTACGTAGTTCAGTATGATCC
CCCACAAGACCCAAAAATGTTCAACCATAGGGTTGGCAGAACTGCAAGATTGGGAAAAGAAGGAAGGGCCATCGTTTTTTTACTTC
CAGAGGAGGAAGACTATGTAGAGTTTATGCGCAGAAGAGGGGTTCCTTGTCAAGAGAAACAATGCTCTGAGGAAGCATCTGATGTC
ATCCCTATAATACGGTCACAAGCCATGAAGGACAGGGTAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGGTTA
TAAGGAGCATCTCTGCTCTTACATTTTCAGATGGAAAAGCCTAGAAATCGGAAAGTTAGCAATGGGATGTGGACTCTTGTATCTTC
CTTCAATGTCTGAAGTCAAACAACACAGACTCTCCAGTGAGGGTTTCACTCCCGTTACAGACATCAAGTTTGAGGACATCAAGTTC
AAGGGACAAATTTAGGGAGAAGCAGAGGAAGCAGAACATGCAAGCAAGGAAAGAGAAACGGGAACAAGAGAAAAAGGAGAAAGGCA
AGAAGAACTCTAAAAAGGCGGTTGCTGCTGCTGCTGCCACAGATTCTAACAAAAGGAAGCTAACAGGAAAACAGAGACAAACCATC
CAAACCGCTGAAGATGAAGAAGAGATGGCTCGTGATTATCGGTTACTTAAGAAACTCAAGAAAGGTTCTATCAAAGAAGATGATTT
TGCTAAACTTACAGGAGCTGATGACTTTTAACAAACCTTTTTGAAATTTTGCAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_196164 DEAD-box ATP-dependent RNA helicase 18 [Arabidopsis thaliana] | 1035 | 2e-110 |
| CAA09208 RNA helicase [Arabidopsis thaliana] | 1035 | 2e-110 |
| BAF00189 ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] | 1026 | 3e-109 |
| XP_002871160 hypothetical protein ARALYDRAFT_908458 [Arabidopsis lyrata subsp. lyrata] | 1022 | 8e-109 |
| XP_002887390 hypothetical protein ARALYDRAFT_895023 [Arabidopsis lyrata subsp. lyrata] | 933 | 2e-098 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FLB0 DEAD-box ATP-dependent RNA helicase 18 | 1035 | 1e-111 |
| Q8GXD6 DEAD-box ATP-dependent RNA helicase 49 | 905 | 1e-096 |
| Q761Z9 DEAD-box ATP-dependent RNA helicase 18 | 785 | 1e-082 |
| Q54EC2 Probable ATP-dependent RNA helicase ddx55 | 570 | 9e-058 |
| Q2NL08 ATP-dependent RNA helicase DDX55 | 502 | 7e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WRR0 ATP-dependent RNA helicase-like protein (Fragment) | 1026 | 2e-109 |
| B9S466 Dead box ATP-dependent RNA helicase, putative | 876 | 4e-092 |
| B9HHV1 Predicted protein | 842 | 4e-088 |
| B8ADF1 Putative uncharacterized protein | 787 | 9e-082 |
| B7EFB7 cDNA clone:J013162N07, full insert sequence | 785 | 2e-081 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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