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Information for unigene UN24937

FASTA Sequence
Unigene ID: UN24937Length: 1320 SSR 
AGTGAACCGGAAACAAAGATCGGAGATCGAAGAAGAGTGAAAAAATTCGAAGAGTTGCCTCTCTTTCTCTCTATCGATTTCTGCAA
TCTCACTCACAGATTCATCCCAGTGTCAATTCAGCGGGAGATAGAGGCGAGGCGTCTGAATCATAACTCCAGAATCAGGGGAAGAG
GCGTACAAATCTGGCGAAAGTGGAGGGGTTAAGGGCGAGGCCGTGGCTGAAGCCAGGATCTTATGCAAATGGAGATCAATATGACT
ACGACGGAGACGAGGATGACCATTCGAGGCCTTGGTGGCGCCGACGCCTCAGATCCTTGTATATGGCGGCGAGTTCCTTCACTCCC
TCCACTTTCCGAATAGCAATCTCGCTCCTCCTCCTTGTCGCTATCGGCACTGCTCTCATTTTTCTCCCCGTTGAACAGAAATTGAA
GGACTTCTTGTTATGGATTAAGGAAGATCTTGGACCCTTTGGGCCAATTGCACTGGCTTTGGCTTATATTCCCCTCACAGTTGTGG
CGGTTCCGGCTTCTGTACTTACGCTAGGGGGTGGTTATCTTTTTGGCCTGCCTGTAGGATTTGTAGCCGACTCTCTTGGAGCTACA
TTAGGTGCAACAGCAGCATTTCTACTTGGTAGAACGATTGGTAAATCTTATGTCACCTCAAAAATAAAGCATTACCCAAAGTTTCA
AGCTGTTTCCGTTGCAATTCAAAGATCTGGCTTCAAGATAGTTTTGCTGCTACGTGTTGTTCCCCTTCTGCCCTTCAATATGTTGA
ATTACCTGCTATCTGTCACCCCTGTTCGGTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACGTTTGCGCTA
GTTTATGTTGGAACAACACTGAAAGATCTTTCTGATATTACACATGGGTGGCATGAGGTGTCAATTTTTCGTTGGGTACTAATGAT
GGTTGGCATTGCTCTAGCTGTAATTCTGATAGTATGCATTACAAGAGTGGCGAAGTCATCATTGGAGAAAGCATTGGCTGAAAATG
CAGCAGATATATTAGATGGGAAGAAGAATGATGACACATCCATGCTACCCATAGCAGAACCACCACCACCACCGGATCATCTACAC
GAGCCTCTCGACATCAGAATCGACCCATAAGAAAAGGACAAACAAAAGAAACCAAACCTCTTGAGTTTGTAAATTTTTCAAAGATT
TTTGTTTTACTGAGGGAGAATATTATTAGATAACGTTCTGTATAGCCCATAATAATACATAAATTCACGTTTAAGTCGTTCCTTTT
CTCAATTGGTTATTTCTATTTACTTGAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892154 hypothetical protein ARALYDRAFT_887478 [Arabidopsis lyrata subsp. lyrata]12532e-135
NP_171825 SNARE associated Golgi protein family [Arabidopsis thaliana]12461e-134
AAC72122 F15K9.14 [Arabidopsis thaliana]11913e-128
XP_002463296 hypothetical protein SORBIDRAFT_02g041420 [Sorghum bicolor]9655e-102
XP_002271997 PREDICTED: hypothetical protein [Vitis vinifera]9583e-101

Swiss-Prot top hits (Blast detail)Scoree value
Q55909 TVP38/TMEM64 family membrane protein slr03053674e-034
Q3U145 Transmembrane protein 642124e-016
Q6YI46 Transmembrane protein 642072e-015
Q8MXN7 Transmembrane protein 41 homolog1651e-010
A1A5V7 Transmembrane protein 41B1596e-010

TrEMBL top hits (Blast detail)Scoree value
Q6NMJ6 At1g0326012468e-135
Q9ZVS7 F15K9.1411912e-128
C5X434 Putative uncharacterized protein Sb02g0414209653e-102
A2YPG8 Putative uncharacterized protein9421e-099
C4JB61 Putative uncharacterized protein9421e-099

Arabidopsis top hits (Blast detail)Scoree value
AT1G03260.1 LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).12537e-138
AT5G19070.1 LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins in 693 species: Archae - 10; Bacteria - 1724; Metazoa - 229; Fungi - 74; Plants - 161; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).8702e-093
AT1G22850.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).2591e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  25%
 
102  25%
 
192  25%
 
72  25%

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