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Information for unigene UN24947
| FASTA Sequence |
| Unigene ID: UN24947 | Length: 976 |
SSR | | CTCTCAAACCAAATCCTTATTTTGTGTATCTGAGCAATAATTAATTACATAATAAAGTAAATCAATCGCACATAAAAAAACACACA
CAAAAAAACGGAGGAAACGGAGAAGATATGAAGGTAAAAGGGACAAGAATCTGAGCCCTAAGGATTGTTATCACTAGGAGGAAAAC
GTGGGAGATAAGGTATCCATGTTGTCGGATCTCTCCAGTCAAACGCAGGCAATGATGCGTTAGGGTTTCCTAAAGGAAGAAAAGGG
AAAGGGAAAGACGGAAGCGGAGGCAGAGTAGGCAACGGCGGCAGAGTTGAGTACGGCCAAGGGAACCAGTACGGTGGCATATAAGG
CCAGAAGAGCTTCGAATCTCTTGACTTATCCTCCACCTTCTCCTCTCGCTGGTGGTGATGTCTCTTTCCGCCGCTGCAAAGTGTGG
TGTTTCTGTGAGAAGGTTTGTAGCTGAGTGCGCTTAAGCTGTAGATACAGACACGATCCTGCTTCGACTTGATAGATACTTCGTTG
GCTGCTGTCTGAAAAACGGGGATGTTGCAGCGGACGTTGTTGTTGTTGTTGTCGGAGGAGGGTTTGAGCAGCTTGGTGCTGCACTG
AGAGGATATGGCGATTCCGTCGACGCAATCTATCCCGTCGACGTGAGGGATGTCGAGCTTGTAAACGCCGTTTCTGTTTGTTGTTC
TGTTCACCGATATGTTCACTTCCTCTGTTGTTTTCGGTGAACTCGCTTTGAATCTACAGCTCACATGAACTTCCACTCCTTGTAAG
AAATAGCTCTGTCTTGAGAAAGTGTTGATTGCACAAGTGTCGCAGTAGACAACTCCGACGACTGTGATGCGAGAAGAAGGGTCCGG
GCTTCCTCCCGGTGGTGAAAGGCCACGACCACGGCCAAAAGCTTGGTGTAACAAGCTAGGAGCTAGAAGGAGAAGACAGAGAAGAG
GAAGATACATTGTGGCTAATCTCTTTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873600 hypothetical protein ARALYDRAFT_488130 [Arabidopsis lyrata subsp. lyrata] | 1187 | 5e-128 |
| AAM62468 unknown [Arabidopsis thaliana] | 1185 | 9e-128 |
| NP_196818 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] | 1183 | 2e-127 |
| XP_002514867 hydrolase, acting on ester bonds, putative [Ricinus communis] | 575 | 5e-057 |
| XP_002303768 predicted protein [Populus trichocarpa] | 564 | 9e-056 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LEU2 Putative uncharacterized protein | 1185 | 6e-128 |
| Q9FY96 Putative uncharacterized protein At5g13140 | 1183 | 1e-127 |
| B9GMP5 Predicted protein | 635 | 4e-064 |
| B9RM98 Hydrolase, acting on ester bonds, putative | 575 | 3e-057 |
| B9GZC8 Predicted protein (Fragment) | 564 | 6e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G13140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26960.1); Has 90 Blast hits to 85 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 1184 | 5e-130 |
| AT3G26960.1 unknown protein | 340 | 3e-032 |
| AT5G41050.1 unknown protein | 334 | 2e-031 |
| AT5G45880.1 pollen Ole e 1 allergen and extensin family protein | 115 | 4e-006 |
| AT4G18596.1 pollen Ole e 1 allergen and extensin family protein | 113 | 7e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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