Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN24955

FASTA Sequence
Unigene ID: UN24955Length: 1551 SSR 
CCTCTGTCTGAAAAATTATTAAAATTTCAGAATACAGCACATATACATCTCCAAAAATTAACAAAAAGGAAAACAGAACCTTTAAT
TGAAACACTTGCTACCAAAAGAAAACAAGGAGACCAAAAAAGTTGAAAATTCGAATCTAAATAAGTTGTGAACGTGGAAAAAAATC
AATTAAAACTATACTAGAAAAGAAATGTTAAAGACTAAGACTAAACCGCGTCAGAGCCGTAAGGTTCAAGTTTCTTCTCATCATCT
TTAAGCTCACTGAATCTTGACTTCTTGTCCAAAGAAGAAGAAGAAGACGAAGCCTTAAGAGACTGACCTCTCGTGTTAAGGTAAGT
ATACAACGACGTCCCAATAATCGCCACAATCGCACCGCAAACGCTAACCACACCACTATTCGACCCGAAGATGTAGAAGTTCCCAA
GGAGGAGGACACAGGTCTTGAACTGTCCCAGGACAACGTGCGTGATCGCAGAAGTCGCTCCGAGAGCTAAGGCTCCTGACCACTGA
AGAAAGAATCCGAGAAACGCTGAGACGAAAATGGCGGATGTGTTGGGAAGGCTCCAGTCGAAGGAAAGAGCGCCTGGTGGATCCAA
GAAGGGAATCATTGATACAAGAAACAAGAGAGTGATTGGAGTTGTCTTCCACATCAACGCTAATGCGGTCCAGTTCTCTCGTTGTT
GCATGTTTGACCATAAGATTTTGTTGGTAGCGCTAGGTATGATCCATGCTAAAGCCACACAAGCACCAAACTGACTAAACTGCAAA
TCTGTTACAGTCGCAACCGCAACTCCTACAGATACAACTGTAAGTGCAACCACCTTCATGAAAGAAACTCTCTTTCTATACCACAA
GAACTCTGCAAACACAATCGAAGGCGTGACAGCGATTTTCGCCATCTGGTAGAATCCAACACTATTATACTTGAGGCTAACATTAG
CGAGACCAGTAGAGAGTGACATAACAATGCCGAGAGTGTAGAGGGAAAGAGACGATGACTTGGTGGAGGAAGGAGGAGGTGGAGCG
GGGAGAAGGGAGAATGATTTGAGAAGAGCCATTAGTAGATAAGCCACAATGTAGTGGATGAACGTGAGGAACACTGGGAACTCAAA
CCCTATGTTCTTAAGCACCCATTTGTTCATGAAGATAATGCTAATAGCAACGAAGAAGTTGAAAGTGAGAGCAAGAGTTGGACCAC
AGATACGGTGCTGCGACTGTTGCTGTTGCTGCTGTCTCTTTGGAGTCTCCGGCGAACGGAATCTGTTGAACAACGATGCTCGCAAC
TCCTCCAGTGCTTTCCCTTTTTCGCCGGCGTCGCTGTCTTTGCGTTTGAGAATCTTCTTCGCATCTTTGCCAAGCCAGGAGCTTAT
CATCATCTTCGGTCTTAATAACATTCTCAGATTCGCCCCAGAGAGGAGAGACAAAATCAAAACATGGCCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTGTTCCGATCGATTGGAGTTATTCGAGTCCTCACACTCACTGAGTTTGAGAATTTTTGGAGAGAGAAGAGAGA
CCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866182 At5g57100 [Arabidopsis lyrata subsp. lyrata]17792e-196
NP_200520 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]17551e-193
AAO24585 At5g57100 [Arabidopsis thaliana]17514e-193
AAM62761 unknown [Arabidopsis thaliana]17319e-191
XP_002527697 organic anion transporter, putative [Ricinus communis]12102e-130

Swiss-Prot top hits (Blast detail)Scoree value
Q8RXL8 Uncharacterized membrane protein At1g068903811e-035

TrEMBL top hits (Blast detail)Scoree value
Q9LU76 Gb|AAF04433.117551e-193
Q84WJ4 At5g5710017513e-193
Q8LEA4 Putative uncharacterized protein17461e-192
B9SNX8 Organic anion transporter, putative12102e-130
A2Q422 Putative uncharacterized protein11617e-125

Arabidopsis top hits (Blast detail)Scoree value
AT5G57100.1 transporter-related17636e-197
AT5G55950.1 transporter-related11793e-129
AT1G06890.1 transporter-related3811e-036
AT1G06890.2 transporter-related3811e-036
AT2G28315.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).3747e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  67%
 
121  33%

Unigene MembersMember information