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Information for unigene UN24955
| FASTA Sequence |
| Unigene ID: UN24955 | Length: 1551 |
SSR | | CCTCTGTCTGAAAAATTATTAAAATTTCAGAATACAGCACATATACATCTCCAAAAATTAACAAAAAGGAAAACAGAACCTTTAAT
TGAAACACTTGCTACCAAAAGAAAACAAGGAGACCAAAAAAGTTGAAAATTCGAATCTAAATAAGTTGTGAACGTGGAAAAAAATC
AATTAAAACTATACTAGAAAAGAAATGTTAAAGACTAAGACTAAACCGCGTCAGAGCCGTAAGGTTCAAGTTTCTTCTCATCATCT
TTAAGCTCACTGAATCTTGACTTCTTGTCCAAAGAAGAAGAAGAAGACGAAGCCTTAAGAGACTGACCTCTCGTGTTAAGGTAAGT
ATACAACGACGTCCCAATAATCGCCACAATCGCACCGCAAACGCTAACCACACCACTATTCGACCCGAAGATGTAGAAGTTCCCAA
GGAGGAGGACACAGGTCTTGAACTGTCCCAGGACAACGTGCGTGATCGCAGAAGTCGCTCCGAGAGCTAAGGCTCCTGACCACTGA
AGAAAGAATCCGAGAAACGCTGAGACGAAAATGGCGGATGTGTTGGGAAGGCTCCAGTCGAAGGAAAGAGCGCCTGGTGGATCCAA
GAAGGGAATCATTGATACAAGAAACAAGAGAGTGATTGGAGTTGTCTTCCACATCAACGCTAATGCGGTCCAGTTCTCTCGTTGTT
GCATGTTTGACCATAAGATTTTGTTGGTAGCGCTAGGTATGATCCATGCTAAAGCCACACAAGCACCAAACTGACTAAACTGCAAA
TCTGTTACAGTCGCAACCGCAACTCCTACAGATACAACTGTAAGTGCAACCACCTTCATGAAAGAAACTCTCTTTCTATACCACAA
GAACTCTGCAAACACAATCGAAGGCGTGACAGCGATTTTCGCCATCTGGTAGAATCCAACACTATTATACTTGAGGCTAACATTAG
CGAGACCAGTAGAGAGTGACATAACAATGCCGAGAGTGTAGAGGGAAAGAGACGATGACTTGGTGGAGGAAGGAGGAGGTGGAGCG
GGGAGAAGGGAGAATGATTTGAGAAGAGCCATTAGTAGATAAGCCACAATGTAGTGGATGAACGTGAGGAACACTGGGAACTCAAA
CCCTATGTTCTTAAGCACCCATTTGTTCATGAAGATAATGCTAATAGCAACGAAGAAGTTGAAAGTGAGAGCAAGAGTTGGACCAC
AGATACGGTGCTGCGACTGTTGCTGTTGCTGCTGTCTCTTTGGAGTCTCCGGCGAACGGAATCTGTTGAACAACGATGCTCGCAAC
TCCTCCAGTGCTTTCCCTTTTTCGCCGGCGTCGCTGTCTTTGCGTTTGAGAATCTTCTTCGCATCTTTGCCAAGCCAGGAGCTTAT
CATCATCTTCGGTCTTAATAACATTCTCAGATTCGCCCCAGAGAGGAGAGACAAAATCAAAACATGGCCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTGTTCCGATCGATTGGAGTTATTCGAGTCCTCACACTCACTGAGTTTGAGAATTTTTGGAGAGAGAAGAGAGA
CCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866182 At5g57100 [Arabidopsis lyrata subsp. lyrata] | 1779 | 2e-196 |
| NP_200520 Nucleotide/sugar transporter family protein [Arabidopsis thaliana] | 1755 | 1e-193 |
| AAO24585 At5g57100 [Arabidopsis thaliana] | 1751 | 4e-193 |
| AAM62761 unknown [Arabidopsis thaliana] | 1731 | 9e-191 |
| XP_002527697 organic anion transporter, putative [Ricinus communis] | 1210 | 2e-130 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8RXL8 Uncharacterized membrane protein At1g06890 | 381 | 1e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LU76 Gb|AAF04433.1 | 1755 | 1e-193 |
| Q84WJ4 At5g57100 | 1751 | 3e-193 |
| Q8LEA4 Putative uncharacterized protein | 1746 | 1e-192 |
| B9SNX8 Organic anion transporter, putative | 1210 | 2e-130 |
| A2Q422 Putative uncharacterized protein | 1161 | 7e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G57100.1 transporter-related | 1763 | 6e-197 |
| AT5G55950.1 transporter-related | 1179 | 3e-129 |
| AT1G06890.1 transporter-related | 381 | 1e-036 |
| AT1G06890.2 transporter-related | 381 | 1e-036 |
| AT2G28315.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). | 374 | 7e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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