Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN24978

FASTA Sequence
Unigene ID: UN24978Length: 1226  SNP
GTGCTGACAGTTTGACTCACTGGGACATCACTTTCTGGAGTGAGAGGCTCCGTGAATCGAAATACGATATTAATGATGAAGAATTG
CGACCCTACTTCTCACTGCCAAAGGTTATGGATGGGCTTTTTGGTTTAGCTAAGACCCTATTTGGAATTGATGTGGCGCCGGCGGA
TGGCGTAGCTCCGGTCTGGAACAGCGACGTTAGGTTCTACTGCATCAAAGATTCTTCTGGAAATCCCACTGCTTATTTCTACTTTG
ATCCATACTCTCGTCCTTCAGAAAAGAGAGGCGGTGCTTGGATGGATGAAGTTTTTTTCCCGTAGCCGAGTCATGGCCCAGAAGGG
TTCCTCCGTTCGGTTACCTGTTGCGCAAATGGTCTGCAACCAAACTCCACCGGTTGGTGACAAGCCAAGCCTTATGACATTCCGTG
AGGTAGAGACTGTATTCCATGAATTTGGCCATGCTCTGCAGCATATGCTTACGAAAGAAGACGAGGGGCTAGTTGCTGGTATCAGA
AATATCGAGTGGGACGCAGTTGAATTACCTTCACAGTTTATGGAGAACTGGTGCTACCACAGGGATACCTTAATGAGCATTGCTAA
GCATTATCAAACAGGGGAATCTCTTCCTGAGAATGTGTACAAGAAGCTCCTGGCTGCAAGAACATTCCGTGCAGGATCCCTTAGTC
TTCGTCAGCTGAAGTTTGCTACAGTTGATCTGGAGCTGCACACGAAATATGTGCCAGGTGGGACAGAGTCTATTTACGATGTTGAT
CAAAGGGTGTCCATGAAGACACAAGTCATCCCTCCCCTTCCTGAGGATAGATTCCTCTGTAGCTTCAGCCATATATTTGCAGGCGG
TTATGCAGCTGGATATTACAGTTACAAGTGGGCGGAGGTTTTGTCTGCGGATGCGTTTTCAGCTTTTGAAGATGCTGGATTAGATG
ACATCAAGGCCGTTAAAGAGACAGGACAGAGATTCAGAAACACCATACTTGCTCTGGGAGGAGGAAAAGCGCCTCTAAAAGTGTTT
GTGGAGTTCAGAGGACGAGAACCTTCCCCAGAGCCTCTTTTCAGGCACAACGGACTCTTGGTTGCTTCTGCTTGAAACATATGTGT
TCCCCTTAAACTGATCTCGTCTCTACTCTAAACGTTTTTCTTGAATAGTCATCCTCGTACCTTGCTTTGTGGATTATTAAATGTCA
TCCAATAAAATTAAACTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871425 hypothetical protein ARALYDRAFT_487887 [Arabidopsis lyrata subsp. lyrata]13607e-148
NP_568232 oligopeptidase A [Arabidopsis thaliana]13517e-147
BAA98181 oligopeptidase A [Arabidopsis thaliana]13274e-144
NP_569013 Zincin-like metalloproteases family protein [Arabidopsis thaliana]13274e-144
XP_002864966 peptidase M3 family protein [Arabidopsis lyrata subsp. lyrata]13194e-143

Swiss-Prot top hits (Blast detail)Scoree value
P44573 Oligopeptidase A6211e-063
P27298 Oligopeptidase A6174e-063
P27237 Oligopeptidase A6122e-062
P24171 Peptidyl-dipeptidase dcp3665e-034
Q54DD2 Thimet-like oligopeptidase3612e-033

TrEMBL top hits (Blast detail)Scoree value
Q949P2 Putative oligopeptidase A13515e-147
Q94AM1 Putative oligopeptidase A13273e-144
Q9LSL3 Oligopeptidase A13273e-144
B9SMK4 Oligopeptidase A, putative12386e-134
B9HG08 Predicted protein12091e-130

Arabidopsis top hits (Blast detail)Scoree value
AT5G10540.1 peptidase M3 family protein / thimet oligopeptidase family protein13522e-149
AT5G65620.1 peptidase M3 family protein / thimet oligopeptidase family protein13272e-146
AT1G67690.1 metalloendopeptidase2392e-020
AT5G51540.1 metalloendopeptidase1953e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  57%
 
61  14%
 
112  29%

Unigene MembersMember information