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Information for unigene UN24996

FASTA Sequence
Unigene ID: UN24996Length: 1569 SSR 
GTTGACAAAATTGAGATTTTCTACAAAAGTTTGGCGTTTATAGTTTACAATATACAAATTCTCCCATCAACATAGAAGATAGATAT
AGTGACTGTTTTCTGGAGTGGGATGAGTTATGCTCAAAGAATATATAACGTAATAAAAAGAATGTTGTGTGACTTTGCATTACAAA
AGGGAGATTAGCTGTTTGTCTATCTCATGGGTTCAGTATCAGTTTTGTTCTCCACATCTCTGCAATTACCTTCCGTGGCCCAGGAT
CATCAGGACCTTTGTCACGTTGCCCCGAGGTGAAGTATAACTGCCCGTCCCAGTACCCAACCAGCGTCGTCTCCACACGGTATGGC
AACTTTCCAATCACGTACCATTTCATTGTATTCAGGTTAAACTGGAAGATTTCACCAACGAGAACCATCTTCTTGGTTTCAGGATG
CTTCTCTGTGGTGCCTCCAACGATTACAATGGAGTTGTTTACCACTTTCCAAGCAAATTCAATATGTGAATCCGGCTTTGGTATTG
GTGGCATAACTTTCCACTTCATTTCTTTATCCAGCATGTAAACATCACTGAATACAACCTCCAAACGACGTGAGCATTTGAAGATG
GGAGATCCTGGTTTAGCCATGAAATCACCTTCTTGACCACCAATCACAAAAAGCCGGTCATCCACTACTACGCATGCTCTGTGAGG
TCCTCCACGAGGGATCGGAATCTCACTTCTCCACTCTTTTTCCAATGCTTTCCCATCTTTTACAGCGATACTCCAGTGTTCAAGTC
CTGGTGTATGTCGATTCTCTTTGCTTCCACCCATCACGTGGAGTCTACCTCTCCATAGCTGAGTAGCTGGGAGCATACCTAGGAAC
TGGTAAAGAAATGAAGTCACTCCAAGTATTAGTATCAGTGTCGAGCACAAATGTTTTAGCTGTAGGGCCTCTGCATTGAGGACCAT
ACTGACCAGTGACAATGTAGATGAACCGCCCATCAGTTACCATCCCTAAATGAGAATGAGCCATCTCTTTAGGCATATCAAATCTC
CCTCCCCACTTATTATCCACAAAATTGTATATATCAACATGCGAATGCACAAGATTAATGTTGCCGTAACCAGCAAAGACGTAGAG
AAGATTCCTAATCTGAATAGCAGCTCCATCAAGACGAGGGACAGGCGCAGCTGCCATCTTCTCCCATTGTAGTTGAGGAGCATCCA
AATCTTGAAACGTTGCGGAAAGCTTCCTTTCCTTACCTTCTTTATCCTTCTTCTTATTGGATTCAGGAGGGAGTTTTTCGATAACG
GGGGAAGGAAGATAAGTCCCGGAGGCAAGGGAGAAGCGATGAGATGAAGCCCAGAGGAAGTCGGCAACAAGTCCTAAAGCTAGAAG
CGCGAGGCATGACACTAACACAAGCCGACCATAACTCTGTTTCCCCGCTTGTCTCGCCATCTCTCTCTCTCTCTCTCTCTCTGTCT
CTAATTTGGCATCTCCCTGAAGGGCTTCACGAACTTCAATCAAAGGTTAAACCTTTAGATTCAGGCGAAAGCATACAGATGTAGAG
GTAACAGATCTTGATCTCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883284 hypothetical protein ARALYDRAFT_318850 [Arabidopsis lyrata subsp. lyrata]11394e-122
AAG52629 unknown protein; 27363-23366 [Arabidopsis thaliana]11296e-121
NP_175565 kelch-like motif-containing protein [Arabidopsis thaliana]11296e-121
XP_002265018 PREDICTED: hypothetical protein [Vitis vinifera]10184e-108
CBI40071 unnamed protein product [Vitis vinifera]10176e-108

Swiss-Prot top hits (Blast detail)Scoree value
Q9LK31 Kelch repeat-containing protein At3g272208774e-093

TrEMBL top hits (Blast detail)Scoree value
Q84VX7 At1g5154011294e-121
Q9C8K6 Putative uncharacterized protein F5D21.2411294e-121
B9S7E9 Putative uncharacterized protein10156e-108
A5BAB0 Putative uncharacterized protein10131e-107
B9HV26 Predicted protein10131e-107

Arabidopsis top hits (Blast detail)Scoree value
AT1G51540.1 INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species: Archae - 11; Bacteria - 200; Metazoa - 1128; Fungi - 24; Plants - 53; Viruses - 41; Other Eukaryotes - 114 (source: NCBI BLink).11302e-123
AT3G27220.1 kelch repeat-containing protein8773e-094

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
91  33%

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