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Information for unigene UN25008
| FASTA Sequence |
| Unigene ID: UN25008 | Length: 1300 |
SSR | SNP | CTGAGCCGAGCTCGTGAATTGTAACTCATTTTGACACCATCGTAACTATACAACAAACACATTTATTCATTTGTATTTGGTAACCA
CAAATACATCAATATATATATATAACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGGGGGTAAGTACCCCGTAAGACAC
CGCAGAAGAAGCTTGAGTTTCTTGATCCAGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTTGAGATCAG
GACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTGCAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACG
TCAAGAATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTAATTATAGGAGAGAGAAAAGTTTTTGAGACT
AGGAAGCTCGCATACAATCTCTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATCTTGGCTAAGCAACCGA
AAGAGTATGGTATTGGACCGGTTAGCTGGTTAAACCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTAAG
CACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTGATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCT
GTTGTTGGCGAATGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAACAAGATTGTTGTTGTTGATGAACA
AGACGTCAAGATCAAGATTAAAGACCTGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGTGAGATTTTTG
GCTTTCAAGACAGAAGCTGGGAAGTCTCCGGTGAGTTTGTTGTTGCTTAGGTCGAGCTCGTATAAGTATTTTAAGCTGCTGACTTC
AGGCACAGAGCCTAAGAAGTTGTTGGAGTTTGCGTGAAAGATCGTGACTGTGTCTAGCTTGTCGAGGAAGTTATGTAACACGAGTT
TATCGCCAGCAAAGTTATAACCGTTAAACTGGATGCTCGCGAGTGCCTTATTAGATGTATTCGGGAATATTGCGCATTCAAGTCCG
AGGTATTTGTACTTGTTGCAAATGTCGGTGCCATTCCAAGTATCAAGAATACGCTTTGGATCCTCTGTCACTAGTTTCTGAAAAGC
TTTGAGGACTGGGTACACTTTCTCTAGTAGTGGGCTCTCAAAGCCAAAACGCGGCAACGGTGGCTGCCCCGGCGGCTTAGGCGGAG
ATTTACGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188563 leucine-rich repeat-containing protein [Arabidopsis thaliana] | 1509 | 4e-165 |
| XP_002885307 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | 1468 | 2e-160 |
| XP_002894215 hypothetical protein ARALYDRAFT_474107 [Arabidopsis lyrata subsp. lyrata] | 1455 | 7e-159 |
| NP_175397 leucine-rich repeat-like protein [Arabidopsis thaliana] | 1452 | 2e-158 |
| AEI72268 leucine-rich repeat family protein [Citrus trifoliata] | 1130 | 3e-121 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8W3M4 Uncharacterized protein At4g06744 | 780 | 6e-082 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 689 | 2e-071 |
| Q9LHF1 Leucine-rich repeat extensin-like protein 4 | 680 | 2e-070 |
| Q9SN46 Leucine-rich repeat extensin-like protein 5 | 679 | 3e-070 |
| O48809 Leucine-rich repeat extensin-like protein 2 | 652 | 4e-067 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LT85 Similarity to receptor protein kinase | 1509 | 3e-165 |
| Q9FXA1 AT1G49750 protein | 1452 | 1e-158 |
| B9DGR7 AT1G49750 protein (Fragment) | 1115 | 1e-119 |
| B9HS36 Predicted protein | 1067 | 5e-114 |
| B9RYC5 Serine-threonine protein kinase, plant-type, putative | 1055 | 1e-112 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19320.1 leucine-rich repeat family protein | 1509 | 1e-167 |
| AT1G49750.1 leucine-rich repeat family protein | 1452 | 6e-161 |
| AT4G06744.1 leucine-rich repeat family protein / extensin family protein | 780 | 5e-083 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 689 | 2e-072 |
| AT3G24480.1 leucine-rich repeat family protein / extensin family protein | 680 | 2e-071 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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