 |
Information for unigene UN25069
| FASTA Sequence |
| Unigene ID: UN25069 | Length: 909 |
SSR | | GGATTGGATAACGGATAACCCTCGGAACGACGATGCTGCGGAAGAGAAAACCACATCCTTGTGAAGCGTTTAAGAGGAGGAAGAAG
AAGAAGATAAATCGATTCTTTATCTGGAAATTCAATGGCGGTTTCTTCTGTAACTTCCTTCATATTACCCTCTTTCGCCAACCTTT
CATCTTCTTCTTCTTCTACCAAACAGAAAGTCTCTCTGCTTCCATCTTCTTCTACTCATGGCGGCATTGGCTCCTGCGTCCTTAAC
AAACCCTCCATCTCGTTTACGAAGAAGGTCTTCGCAGCTCCCGAGACCCTAACTCCAGAAACCCTCGAAGAACCCGCCTCTGAGGA
CTTCTCCGAGGTTCCAAGCTCTTCCTCAATAAGTGTAGACGCAGATAAGAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTA
GGTCATACTGGGTGCCTCTCATTGAGGACTCATGCAAGCAGATACTCGACGCTGCGAGGAACACCAATGCCAAGACGATGGGTCCT
GTTCCCTTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCCCCCCACGTCCACAAGGATGCAAGGTTCCATTTCGAGATCAG
GACCCACCAGCGGATGATTGATATTCTCTACCCGACTGCTCAGACCATCGACTCCTTGATGCAGCTGGATCTTCCTGCTGGTGTTG
ATGTGGAAGTCAAGCTCTGAAACTACAATGAGGCGATGGGGACTTGCATTGCATGAACAGACTGTTCCTGATAGAATTGGTAAACC
ATGTATCATCCTTTTGAGAGCCTATGTAATGAATATTATCAGCAAAGCTGTAATCTTTTAGACAATCTTTGTTCTTAGTTAATTAA
CAAATCTGCAAGTAAGAAAAGTTCAAAGAAATCTTTTGTGTGTGTTTGT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAW22623 30S ribosomal protein S10-like [Brassica napus] | 889 | 2e-093 |
| ABL97980 30S ribosomal protein S10-like [Brassica rapa] | 869 | 4e-091 |
| NP_187919 30S ribosomal protein S10 [Arabidopsis thaliana] | 804 | 1e-083 |
| ABB97026 unknown [Brassica rapa] | 796 | 1e-082 |
| XP_002884945 hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] | 786 | 2e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LK61 30S ribosomal protein S10, chloroplastic | 804 | 5e-085 |
| Q9M4Y3 30S ribosomal protein S10, chloroplastic | 590 | 4e-060 |
| P17009 Cyanelle 30S ribosomal protein S10 | 354 | 8e-033 |
| B7K833 30S ribosomal protein S10 | 348 | 4e-032 |
| P51286 30S ribosomal protein S10, chloroplastic | 347 | 5e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5MD13 30S ribosomal protein S10-like | 889 | 1e-093 |
| A1YMX4 30S ribosomal protein S10-like | 869 | 2e-091 |
| Q2V615 Putative uncharacterized protein | 796 | 7e-083 |
| B9S9Q5 30S ribosomal protein S10, putative | 615 | 7e-062 |
| A5BC08 Putative uncharacterized protein | 600 | 4e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13120.1 30S ribosomal protein S10, chloroplast, putative | 822 | 4e-088 |
| AT3G47370.2 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| AT3G45030.1 40S ribosomal protein S20 (RPS20A) | 117 | 2e-006 |
| AT3G47370.1 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| AT3G47370.3 40S ribosomal protein S20 (RPS20B) | 117 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
