RadishBase

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Information for unigene UN25101

FASTA Sequence

Unigene ID: UN25101	Length: 1493	SSR
GGGCCTTCCAGAGAGAGAGAGAGAGATAAGGTTTCGCATCTCTCAACTCTTTCTTCCTCTCTCCCCTTTCTCTCTCTAGCCGCCGT TCAATGCTTCGGTTTCGATTCTCCTCTTCCTCTTGACTTCTTCTCTTTTTGCTGCAAGAGAAAAAGTGTAAGAAATCGAAGCTTGA GTGAGGTCAACGACATCCCTCCCCTTTAATCTCATGGACCCAGCTCTCTCACCACCGCCTCCGCCGTCGGAAACCGCCGCTGTAAC CGGCGGTGCGGTTACAGGAGAGAACGGAATCGCAGTGGATCCTTTTCTCGTCGAGGCTTTGCAGAACCCTCGCCATCGTCTCACCA TATTGCGGATGGAGCTTGATGTTCAGCGCTTCTTACAGAGCCCTGAGCAGCAGCAGTTCGAGTTCCAGCGGTTTCCTACTTCCTAT CTCCGCCTTGCAGCTCACCGCGTTGCTAACCACTACGGACTAGCTACATCGGTTCAAGAAATGGGTGTTGATGGCAGCGAGAACGT AATCCTCGTGACCAAAACTTCGTCGCCGGCGGCGAGCAGGTTTCCTTCTGTTGTTAGGCTGTCTGATATCCCCGCCGCGGCTAAGC AGCAGTCAGAGAATGTTAAGTTCGAGCACATGAAAGTTTCAATCAAGACTCGGCCTTCTAAAGGGTCTGGATACGAAGGTGGGGAA GTGGAGAAGAGACGTGGTCCTCTCAGGAGTGTGGAAGAGAGGAAAGAAGACTATGACAGGGCTCGAGCAAGGATATTCAATGGTCT CACGGGCTTCACTGGTGATGAATCTGAATCTGAAACTCAGGTTTATGAGAGGAGAGATGACAGTCAGGCATCTAAGAGCTTAAGCG TGAGGGAGACCGGTCCAACATCTCGTGTTGCGATTCTTAGAGACAGTGAGAAAGATCGTTTTGATCCTGATTATGACCGCAACTAC AAAAGGTACATTAGGAGCCTTCCGGTTAATCAGAGTTTCAATGTACCACCACCCTTCAACATGATGCAGCAACCATACTACCAAAT GGGATTTACCGGATACAACCACACTCCTGCTGCTTCTCTCAGCTTTGGACCACCTGCAAGCGGCGCTATCATGAGTCCTTATGGCA CTACAGTTGTACACCAGCCTTCAACGGATGCAATGTATATGCAGTGGCCTATGATGTATGCTCATTCATATGAGCAGCTCAGAAAT GCCTCTCTTCAGGCACAGTTCTGTCAGCAACCCTTGAGCTTCGAGTACATGCAGAACCGCTAGGCTTGAAGTCCTCAAGTCAATCT TTATCTCTGTTTACCTGCTTTTTTATATAAAACTTATTATTGTTGTTATGGAAATTTTTGTAACGTCGGAAGGAAGAAGATAATCC TTTTATTTTCTCCTAACCTTATCAGTGAACTGCTAGTTTTATGGGTCAAATCGTTATTAGAACTGCGTCAGTGTTGAATCGAACGT TACATGTCCATGGTTGGCTTCAAAAGTTGTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191227 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	1200	3e-129
XP_002876378 hypothetical protein ARALYDRAFT_486108 [Arabidopsis lyrata subsp. lyrata]	1197	7e-129
XP_002879898 hypothetical protein ARALYDRAFT_483163 [Arabidopsis lyrata subsp. lyrata]	979	1e-103
AAM64355 unknown [Arabidopsis thaliana]	947	7e-100
NP_565947 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	943	2e-099

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9LET8 AT3g56680/T8M16_10	1200	2e-129
Q8LD07 Putative uncharacterized protein	947	5e-100
O22209 Expressed protein	943	1e-099
B9H8R7 Predicted protein	849	1e-088
A5AMT9 Putative uncharacterized protein	843	5e-088

Arabidopsis top hits (Blast detail)	Score	e value
AT3G56680.1 nucleic acid binding	1201	9e-132
AT2G40960.1 nucleic acid binding	944	6e-102
AT3G10770.2 nucleic acid binding	644	3e-067
AT3G10770.1 nucleic acid binding	606	9e-063
AT5G05100.1 nucleic acid binding	603	2e-062

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			6%


11	4			24%


21	9			53%


20	1			6%


19	2			12%

Unigene Members	Member information