RadishBase

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Information for unigene UN25110

FASTA Sequence

Unigene ID: UN25110	Length: 989	SSR
GGAATCTTCCGATCTTTTATTCTTCCTTCATCGCTTTGATCGTCATCACCCAGATCCTCCATTCTCCTTCGTTCCTCCTTGGAGGA TCAGATCTTGGAAGGTCCTCAGCTCAAGGAGAGGAGGAGAAGAAGAAGGGTGAGGAGAGAGAGAGAGACTTTGAATTGAAGGATGT CTTCTTTCACAGGAACTCAGCAGAAATGCAAGGCTTGCGAGAAGACGGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGTGTTAGC TATCACAAGTCTTGCTTCAAATGCACTCACTGCAAATCCAGGCTTCAGCTGAGTAGATATTCATCAATGGAAGGTGTGTTGTACTG TAAGCCTCATTATGAGCAGCTCTTCAAGGAGTCTGGTAGCTTCACCAAGAACTTTCAGTCACCTGTTAAACCGGCTGAGAAATCAA GTCCTGAGCTGACAAGGACCCCTAGCCGAGTTGCTGGTATGTTCTCAGGCACACAAGAAAAATGCGCCACTTGCAGTAAAACTGTC TATCCTATCGAAAAGGTAACAGTGGAGAGCCAGACATATCACAAGTCCTGCTTCAAATGCTCACACGGAGGCTGCCCTATCTCACC ATCAAACTACGCAGCTCTTGAAGGGATTCTCTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACT TAATCAAATCTGCTTCCATCAAACGCTCTGCGGCAGCCGCAGTCGCTGCTGGTACACCTGCAGCCGCCGTTCCTGAATCTTAAAAA AACTCAAATAATCCTCTCTCCTCCCTAGTCTAAATTGAAAACTCAATGCCAAACTGATTCAGTTTGTTTTCTCTTTTATGCCTTTG TGTATGAGTGTGTAATACTGTAATCTATCCTTTGATGTTCTTTGCTTCCATTAATCTCTCTCCTAAAGCTTGTTTGTTGTCGTTAT CTGGTATCTCTATAAAAAAACTGAGACTTTCCTTTTTCGAATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191136 GATA type zinc finger transcription factor-like protein [Arabidopsis thaliana]	998	5e-106
XP_002876333 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	993	2e-105
BAH20111 AT3G55770 [Arabidopsis thaliana]	991	3e-105
ACU23614 unknown [Glycine max]	890	2e-093
XP_002279954 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	866	9e-091

Swiss-Prot top hits (Blast detail)	Score	e value
P29675 Pollen-specific protein SF3	542	2e-054
Q4U4S6 Xin actin-binding repeat-containing protein 2	237	4e-019
Q4KM31 LIM domain-containing protein 2	222	2e-017
Q1LZA7 LIM domain-containing protein 2	219	4e-017
Q9BT23 LIM domain-containing protein 2	219	4e-017

TrEMBL top hits (Blast detail)	Score	e value
Q9M047 AT3G55770 protein	998	3e-106
B9DH94 AT3G55770 protein	991	2e-105
O04193 At2g39900/T28M21.6	942	1e-099
C6TL24 Putative uncharacterized protein	890	1e-093
A5BSA7 Putative uncharacterized protein	866	6e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT3G55770.1 LIM domain-containing protein	999	1e-108
AT3G55770.2 LIM domain-containing protein	999	1e-108
AT3G55770.3 LIM domain-containing protein	999	1e-108
AT3G55770.4 LIM domain-containing protein	999	1e-108
AT3G55770.5 LIM domain-containing protein	999	1e-108

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			29%


6	4			57%


9	1			14%

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