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Information for unigene UN25116

FASTA Sequence
Unigene ID: UN25116Length: 1034  SNP
GGGAAACGTTTCTAAGAGTTTTACACGAGTTGTTGGTGAGACAGAAACAGAGTTGATCAGTCTCCATATGAGGAACCACAACAACG
CAAGACAAGTGATTGGTGTGAAAGAGAGTGGTGAAACTCTTGTTCTAGCAACTTATGATGGGTGTGTCTGGTCTTTGCTTGAAGCA
AAATGGTCACTTAAGCAAACAAGCAGTCTTGATGGTCCTGTCTTTGAGATTTTTGGTGTGAGAATGGTGAAAGTTTATTATGGAAG
GAAGCTGGAGTATGAGACAAAACGTTGCGCGAAGCTAAGAAGTGAGCAAGATTTCATGACAGCTGTCGAATTCTCAAAGCAGTATC
CTTATGGTAAAGCTGTGGGGTTGCTAGACTTGAAGTTTGGTTCTTTTGAGGCTAATGAGAGATGGTTGGTTTTACCTGGATTAGTA
TCTGCTTTCATACTCAATGATCTTCTTAAGAAGGAAGGTTTTTGTGGAGCTGCAAAAGACATAGTGAAAGGTAATGGGATAACTGT
GAAGCTAGAAGAAGAAACAATGATGCATGTGAACATCAATGGGGGTGCTAGGTGCTTGTCCAAGGAGCTTAACAGTGGGAACATGG
TGGAAGAAGAAGGTGGTCATTGTGGTGGTTGTGGTGGATGTGGAGGATGTGGCGGTGGCAGTGGGTGCGGAGGAGGTGGTGGAAGA
TGTGGTAATATGATGACCAATGAAAATGTTACCACAGGTGGCGGCTCCTGCACTGGCGGTTCCACTGGATGCGGTGGGTGCGGTGG
AGCCGGTGGAGGATGTGGTAATATGATGACCAATGAAAATGTTCCATCATTAGTAGCAGCAGCGGAAGCTCCCATCGACGCAGTTG
CAGCTTGATTATTATTTAAAGAAAGAAAAACGATATTAAGTTTTATCTATGTGATGTTAACAAATGGACTAACAGTATAATAAAAC
TAATGAGATGTGTTGTTATGTGTTTTCTTTTCTTTTAAACATTTGTAAGCTGTAATAAAATATATATTTAAACGTTTTCTAACAAT
GC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195503 uncharacterized protein [Arabidopsis thaliana]9994e-106
XP_002866925 glycine-rich protein [Arabidopsis lyrata subsp. lyrata]9823e-104
XP_002321500 predicted protein [Populus trichocarpa]5702e-056
NP_001031396 uncharacterized protein [Arabidopsis thaliana]5675e-056
XP_002878627 hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata]5641e-055

Swiss-Prot top hits (Blast detail)Scoree value
P18165 Loricrin1631e-010
Q9ULL5 Proline-rich protein 121577e-010
P09789 Glycine-rich cell wall structural protein 11488e-009
Q1HVF7 Epstein-Barr nuclear antigen 11442e-008
O53553 Uncharacterized PE-PGRS family protein PE_PGRS541343e-007

TrEMBL top hits (Blast detail)Scoree value
Q9SZJ2 Putative uncharacterized protein AT4g379009993e-106
B9IE81 Predicted protein (Fragment)5701e-056
Q9ZQ47 Putative uncharacterized protein At2g226605673e-056
A9YWR4 Glycine-rich protein4885e-047
B9SMJ6 DNA binding protein, putative3926e-036

Arabidopsis top hits (Blast detail)Scoree value
AT4G37900.1 glycine-rich protein10108e-110
AT2G22660.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 14843 Blast hits to 4550 proteins in 469 species: Archae - 40; Bacteria - 5555; Metazoa - 4422; Fungi - 897; Plants - 1977; Viruses - 191; Other Eukaryotes - 1761 (source: NCBI BLink).6074e-063
AT2G22660.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 257 Blast hits to 239 proteins in 58 species: Archae - 0; Bacteria - 21; Metazoa - 12; Fungi - 149; Plants - 61; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).1971e-015
AT1G54215.1 proline-rich family protein1585e-011
AT5G23150.1 HUA2 (ENHANCER OF AG-4 2); transcription factor1576e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
75  25%
 
104  20%
 
82  10%
 
181  5%
 
98  40%

Unigene MembersMember information