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Information for unigene UN25158
| FASTA Sequence |
| Unigene ID: UN25158 | Length: 929 |
SSR | | GGACTCACTCAGACAGCGACTTCGATAGTAGAGCCAAACACACGAATGGCGTCTTCTCTACCTACATTCTCCAGAGTCTTACCTTC
CTCATCAAGTAAAACTTCTCCCTCCTTCCTTCCCTTCCGATCTCCTTCCCTCAAGATTACCAGTTCCGCTTACTTCCTCCCATCAT
CTATCTCCCTCTCTTCACGTCGCGCATCCTTCATCATCCCACGTGCCACTCCCTCCTCTTCCGAGGGATCCGACTCGCTAGCCAAA
ACCACCTTCCACGGTCTATGCTTCGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGACAAAGCATGCATCTTCCC
TTCCAACCAGCAAGAGCGTGACGAGATCGGCTCTAACGCCCTCTCCGGTCTACCGGACTCCCACAAACCCCGCTTCGTTGAGCCAG
GAGAGATCAAATCTAAATACTCGATCATAGTCGCCGGTGAGAACTTTTGTTGCGGGTCGTCACGTGAACACGCTCCTGTCTGTCTA
GGAGCAGCCGGAGCTAAAGCCGTTGTTGCTCAGACTTACGCAAGGATCTTTTTCCGTAACTCGGTGGCTACGGGAGAGGTGTTTCC
CCTCGAATCAGAGGTTAGAGTCTGCGACGCGTGCACGACAGGAGACACGGTGACGATCGAGCTGAGGGATAGTGGTGGTTTACTGA
CTAATCATACAACCGGTAAGCAGTATAAGCTGAAGGCGATCGGTGATGCCGGACCGGTTATTGATGCTGGTGGTATCTTTGCTTAT
GCGAGGAAAGTGGGAATGATTCCTTCTCCATCAGTAGCTTAACTATCTTCATATTTTATATTATGTGTGTTGAGAGTTATATGTTC
TCTTCCACGTTGTTGTTGTTGTTTTATGTAATGAATAAGAAATCTAAAGGCAAGAAGAAAACATGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181838 isopropylmalate isomerase 2 [Arabidopsis thaliana] | 989 | 5e-105 |
| XP_002880024 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 978 | 9e-104 |
| XP_002880023 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 787 | 1e-081 |
| NP_181837 Aconitase/3-isopropylmalate dehydratase protein [Arabidopsis thaliana] | 782 | 5e-081 |
| XP_002878250 aconitase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 775 | 3e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| B5YHE5 3-isopropylmalate dehydratase small subunit | 246 | 3e-020 |
| Q9UZ06 3-isopropylmalate dehydratase small subunit 1 | 236 | 4e-019 |
| Q8TX94 3-isopropylmalate dehydratase small subunit 1 | 230 | 2e-018 |
| Q8U2A0 3-isopropylmalate dehydratase small subunit 1 | 227 | 5e-018 |
| B9MLV3 3-isopropylmalate dehydratase small subunit | 224 | 1e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZW84 3-isopropylmalate dehydratase, small subunit | 989 | 3e-105 |
| Q9ZW85 3-isopropylmalate dehydratase, small subunit | 782 | 3e-081 |
| Q9LYT7 3-isopropylmalate dehydratase-like protein (Small subunit) | 760 | 1e-078 |
| B9SXE3 3-isopropylmalate dehydratase, putative | 702 | 6e-072 |
| A9PJA7 Putative uncharacterized protein | 688 | 2e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G43100.1 aconitase C-terminal domain-containing protein | 989 | 2e-107 |
| AT2G43090.1 aconitase C-terminal domain-containing protein | 782 | 2e-083 |
| AT3G58990.1 aconitase C-terminal domain-containing protein | 760 | 6e-081 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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