Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25163

FASTA Sequence
Unigene ID: UN25163Length: 840  SNP
GGAATTCTCAAATCTCTAGAGTTTCAAGCTCGATCTTCTCTATCACCATCATCATCGTCCATGGCCTCGAATTCGCAAGCTATCCT
TCTCCTTCAGAAACAACTGAAAGATCTGTGTAAGCATCCTGTCGATGGATTCTCCGCGGGGCTCGTCGACGAGAAGAATATATTCG
AGTGGAACGTTACCATCATCGGACCTCCAGATACTCTCTATGAAGGAGGATTCTTTAACGCTATAATGAGCTTCCCTCAGAATTAT
CCTAATAGTCCACCAACTGTTAGGTTTACTTCAGATATGTGGCATCCTAATGTTTATTCTGATGGTCGTGTTTGCATTTCTATTCT
TCATCCTCCTGGTGATGATCCAAGTGGTTATGAGCTTGCTAGCGAGCGCTGGACCCCTGTTCATACTGTTGAAAGTATTATGTTGA
GTATTATATCTATGCTTTCTGGTCCAAACGATGAGTCTCCTGCAAACGTTGAAGCTGCTAAAGAATGGCGTGAGAAGAGAGACGAG
TTCAAGAAGAAAGTGAGTCGGTGTGTGAGAAAGTCTCAAGAAATGTTATGAACAACAACTACGAACTTTCCACGCTTATGATATCT
CTCTCTGGAGTTTCATCAAAGTTCTTCATGTTCCCCTTATCTGAAACCCTTAAAAAAAAACTGCCCAAACACAACCTGGTTTTACA
TTTTTATTTTTCTTGCGTTGGAGATCCAGAGCTTTCTGAAATGTGTTGTTGAATTCTCGAGTAACTGGTTATCATAATGATAAAAA
CTTGTATTCGTTAAGAGTAATGCTTCTTTGCTCTTAACCTTTAAACGTGACAGACTCATTTGCTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAL86003 putative E2, ubiquitin-conjugating enzyme UBC7 [Arabidopsis thaliana]8802e-092
NP_568902 ubiquitin carrier protein 7 [Arabidopsis thaliana]8802e-092
XP_002866325 ubiquitin-conjugating enzyme E2 7 [Arabidopsis lyrata subsp. lyrata]8659e-091
Q42540 RecName: Full=Ubiquitin-conjugating enzyme E2 7; AltName: Full=Ubiquitin carrier protein 7; AltName: Full=Ubiquitin-protein ligase 78613e-090
NP_566884 ubiquitin-conjugating enzyme E2 13 [Arabidopsis thaliana]8578e-090

Swiss-Prot top hits (Blast detail)Scoree value
Q42540 Ubiquitin-conjugating enzyme E2 78611e-091
Q42541 Ubiquitin-conjugating enzyme E2 138573e-091
P42747 Ubiquitin-conjugating enzyme E2 147992e-084
P25868 Ubiquitin-conjugating enzyme E2 76844e-071
Q9Y818 Ubiquitin-conjugating enzyme E2 155931e-060

TrEMBL top hits (Blast detail)Scoree value
C6T1V1 Ubiquitin carrier protein8145e-085
A2WWU3 Ubiquitin carrier protein8137e-085
Q06H22 Ubiquitin carrier protein8137e-085
Q943L1 Ubiquitin carrier protein8137e-085
C6SWR4 Ubiquitin carrier protein8073e-084

Arabidopsis top hits (Blast detail)Scoree value
AT3G46460.1 UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase8582e-092
AT3G55380.1 UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase8001e-085
AT5G59300.1 UBC7 (UBIQUITIN CARRIER PROTEIN 7); protein binding / ubiquitin-protein ligase7167e-076
AT1G14400.1 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase2184e-018
AT1G14400.2 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase2184e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  36%
 
64  36%
 
202  18%
 
71  9%

Unigene MembersMember information