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Information for unigene UN25179

FASTA Sequence
Unigene ID: UN25179Length: 900 SSR 
GGGTGTGCGAGTGCGATGTTCAATGTGTTTCTCACACCCACTTTATGCTTTATTACTTACAAACGAAGAAGAACCCAATAAAATAT
AGTTGGAAGAAAAGAGAGAGAAAGAGAGGATCTCAGAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGGAGATGGAGAAGAGA
AAGATGGTGATGTGTGGTGTGCTATCACTTCTGGGTTTATTATCTGCTGTTACTGCCTTCGCTGCTGAAGCTACCCGAATCAAGAA
ATCTCAGCATCAACTTAGCGGCTCCTATCTTCCGTCTTCTCTGCTTAAGGAACTAGAAAGAAAAAAGTTGAAGAAAAGCTATGGCG
TATGCACCACCGATGAAGCAAGGAAAGGCAGGATTTGAGGAGACACAAGAGCAGATTCACAAGATCAGAATCACTCTCTCCTCTAA
GAACGTCAAGAACCTTGAGAAGGTGTGCACTGACTTGGTCCGCGGAGCTAAAGACAAGAGATTGAGAGTCAAAGGACCAGTGAGGA
TGCCAACTAAGGTTCTCAAGATCACCACCAGAAAAGCTCCTTGTGGTGAAGGAACAAACACATGGGACAGATTTGAGCTACGTGTG
CACAAGCGTGTGATCGATCTCTTCAGCTCTCCTGATGTGGTGAAGCAGATCACTTCCATCACCATCGAGCCTGGTGTCGAGGTCGA
GGTCACCATTGCTGATTCTTAGATGGTTGCTGTTTAGTTTTTTAAACTTTTTGTCTTTGAATTCCAGCTACTTCTCGCTTTCCTTT
TTTTTGTTGCAAGGTTCAGACTTCTTGTTTTGGTCCTTGTATATGTTATCCTTTGGAGTTTTTCTTTTGTTGAACATGCGACTTCT
TGTTCTGTTTTGCTAAAGCCTTTGGGCCTTACCTCGAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866483 40S ribosomal protein S20 [Arabidopsis lyrata subsp. lyrata]5827e-058
NP_201036 40S ribosomal protein S20-1 [Arabidopsis thaliana]5782e-057
XP_002866482 40S ribosomal protein S20 [Arabidopsis lyrata subsp. lyrata]5773e-057
CAB89318 40S ribsomomal protein [Arabidopsis thaliana]5702e-056
XP_002877555 40S ribosomal protein S20 [Arabidopsis lyrata subsp. lyrata]5692e-056

Swiss-Prot top hits (Blast detail)Scoree value
P49200 40S ribosomal protein S20-15789e-059
Q9STY6 40S ribosomal protein S20-25635e-057
P35686 40S ribosomal protein S205322e-053
Q3ZBH8 40S ribosomal protein S204327e-042
P60866 40S ribosomal protein S204327e-042

TrEMBL top hits (Blast detail)Scoree value
Q8H189 40S ribosomal protein S205701e-056
B9R9P7 40S ribosomal protein S20, putative5548e-055
C6TFE6 Putative uncharacterized protein5512e-054
A5AJ83 Putative uncharacterized protein5467e-054
C6T0U3 Putative uncharacterized protein5441e-053

Arabidopsis top hits (Blast detail)Scoree value
AT3G45030.1 40S ribosomal protein S20 (RPS20A)5796e-060
AT5G62300.1 40S ribosomal protein S20 (RPS20C)5796e-060
AT5G62300.2 40S ribosomal protein S20 (RPS20C)5796e-060
AT3G47370.2 40S ribosomal protein S20 (RPS20B)5643e-058
AT3G47370.1 40S ribosomal protein S20 (RPS20B)5643e-058

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  57%
 
61  14%
 
112  29%

Unigene MembersMember information