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Information for unigene UN25194
| FASTA Sequence |
| Unigene ID: UN25194 | Length: 1097 |
SSR | | GGAGCATTCATCTGTGCACACTTCAACAAACTTTAGTTCCGGCCACGCTCGCTCTATATTCTCCGGGCGAGTGTCGTCTTCTCCAC
TCTCTCTCTCTCGCAATAGATCACTCCGTTGACTCTGCTTTCACCGGGAGAAGATCTGTGGTTTCGGAGATTGTAGCTGATTCGCT
GTTGAAACTAACTCGGCAGCCATGAGCTCGGTTCTGCAGGGTTTTACGAAGTCACTCGCCATGACTTTTGTGTCGGAGATTGGCGA
CAAGACCTTCTTCGCCGCCGCTATTCTGGCGATGCGTTATCCTAGGAGACTTGTGTTGGCTGGTTGTGTCTCTGCTCTGATTGTCA
CGACTATCCTCTCTGCTGCCATTGGATGGGCTGCTCCTAATCTGATCTCTCGCAAATGGACCCATCACATAACAACCTTGTTGTTC
TTTGGTTTCGGGCTATGGTCTCTGTGGGACGGTTTCACAGAAGGAGGAGGGGATTCTGACGAATTGGCCGAAGTGGAAGCAGAACT
GGATTCTGATTTTAAGGCTAATGGTAAAACTACAAAAGATAACAGTAAGATTAAAGATGAAAACAAGAAACAGAAAAGGCCATTCC
TCACACAATTCTTCTCTCCTATTTTTCTCAAGGCCTTTTCGATTAACTTCTTTGGTGAATTTGGTGACAAGAGTCAGCTTGCTACA
ATTGGTTTAGCCGCTGATGAAAACCCCTTTGGGGTTGTCCTTGGTGGAGTTGTGGCACAGTTTGTGTGTACCACTGCTGCTGTGAT
TGGAGGAAAGAGCTTAGCTTCTCAGATATCCGAACGCATAGTTGCTCTTTCTGGTGGAATGCTTTTCATTATATTTGGCATCCAAT
CGTTTCTTACTTCTGTTGAGGCCTAATGCTTCTTTCTGGGGTTGTAGGGAGAGCTGAAGATGACGATGAAGAACTTTGCTATCTAT
ACTTTCTTTAGATATGTAATCTTGATACTAGATGTTTTACGCAAGTCATTACAAAACAAATCGGAAAGTTTATTTAACCTTGAAAA
AAACATTAAAAGGGGGCGCTGAAGCAGCCATTTGACTTCAATAAAGTTCTGGTAATCTTTGGTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173923 putative transmembrane protein [Arabidopsis thaliana] | 1071 | 2e-114 |
| XP_002893419 hypothetical protein ARALYDRAFT_335795 [Arabidopsis lyrata subsp. lyrata] | 1071 | 2e-114 |
| AAM65603 transmembrane protein, putative [Arabidopsis thaliana] | 1068 | 4e-114 |
| XP_002887196 hypothetical protein ARALYDRAFT_475991 [Arabidopsis lyrata subsp. lyrata] | 1003 | 1e-106 |
| NP_177032 UPF0016 protein 5 [Arabidopsis thaliana] | 993 | 2e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P52875 Transmembrane protein 165 | 402 | 3e-038 |
| Q4V899 Transmembrane protein 165 | 402 | 3e-038 |
| Q9HC07 Transmembrane protein 165 | 391 | 6e-037 |
| P38301 UPF0016 membrane protein YBR187W | 187 | 3e-013 |
| P52876 UPF0016 membrane protein sll0615 | 173 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C6M1 Putative transmembrane protein | 1071 | 1e-114 |
| Q8LA33 Transmembrane protein, putative | 1068 | 3e-114 |
| Q9SX28 At1g68650 | 993 | 1e-105 |
| B9ST29 Transmembrane protein TPARL, putative | 954 | 5e-101 |
| B9N257 Predicted membrane protein | 930 | 3e-098 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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