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Information for unigene UN25217

FASTA Sequence
Unigene ID: UN25217Length: 1214 SSR 
GGGAACCGGCCGTTTAATGACCAGAGGTACTTCCTTGATGACCAGAAGCTGAAGAAGCTTGGGTGGGCTGAACGAACCACGTGGGA
GGAAGGGCTGAAGAAGACGATGGAGTGGTACACCGCGAACCCTGAGTGGTGGGGAGATGTTTCTGGTGCTCTGCTTCCTCATCCAC
GGATGCTGATGATGCCTGGTGATAGACTCTGTGATAGCGGTGACGAGCGTAAGGATGCGGATGGGAATCAGACGTTCACGGTGGTT
ACTTCCACCAAGAGTGGTGGTTCTGGAGACAACAAAACGTCGTTGAAGTTCCTCATCTATGGCAAGACTGGGTGGCTCGGTGGTCT
CCTAGGGAAACTATGTGAGAAGCAAGGGATTGTGTACGAGTATGGGAAAGGGAGACTAGAGGACAGAGCTTCTCTTGTGGCGGATA
TTCGCAGAGTCAAACCTACTCATGTCTTCAATGCAGCCGGTTTAACGGGCAGACCGAATGTAGACTGGTGTGAGTCACACAAACCA
GAGACCATCCGAGTCAACGTGGCTGGTACTTTGACTCTGGCAGATGTTTGCAGAGAGAACGGTCTGTTGATGATGAACTTTGCTAC
CGGTTGTATATTTGAGTATGACGCTGCACATCCAGAAGGTTCAGGGATCGGCTTTAAGGAAGAAGACAAACCGAACTTCTTCGGTT
CCTTCTACTCAAAAACAAAGGCAATGGTGGAAAGAGCTTCTAAGAGAATTCGACAACGTATGCACCTTGAGAGTGCGGATGCCGAT
CTCATCCGACTTGAACAACCCACGAAACTTCATCACCAAGATCTCTCGTTACAACAAAGTGGTGAACATCCCAAACAGCATGACCG
TACTAGACGAACTCTTACCGATCTCGATCGAGATGGCGAAGAGGAACCTGAGGGGGATATGGAACTTCACCAATCCTGGAGTGGTG
AGCCACAACGAGATACTAGAGATGTACAAGAGCTACATCGAGCCAAGTTTCAAATGGTCCAACTTCACTTTGGAAGAACAGGCTAA
GGTCATTGTCGCGGCACGGAGCAACAACGAGATGGATGGTGCTAAGCTCAGCAAGGAGTTTCCAGAGTTGCTTTCCATCAAAGACT
CGTTGATCAAATACGTCTTCGAACCCAACAAGAGAACGTAAAAGCCTCGTTCAGATACACACACACACGCACACTTGCTCTTTCTC
TGGTCATTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_188097 UDP-glucose 4,6-dehydratase [Arabidopsis thaliana]11699e-126
XP_002882893 hypothetical protein ARALYDRAFT_478892 [Arabidopsis lyrata subsp. lyrata]11635e-125
XP_002894444 mucilage-modified 4 [Arabidopsis lyrata subsp. lyrata]11618e-125
NP_564633 UDP-glucose 4,6-dehydratase [Arabidopsis thaliana]11421e-122
AAK82539 At1g53500/F22G10_13 [Arabidopsis thaliana]11421e-122

Swiss-Prot top hits (Blast detail)Scoree value
Q9LH76 Probable rhamnose biosynthetic enzyme 311694e-127
Q9LPG6 Probable rhamnose biosynthetic enzyme 211425e-124
Q9SYM5 Probable rhamnose biosynthetic enzyme 110459e-113
Q5UPS5 Uncharacterized protein L7803154e-028
Q8VDR7 dTDP-D-glucose 4,6-dehydratase1514e-009

TrEMBL top hits (Blast detail)Scoree value
Q94AC9 At1g53500/F22G10_1311429e-123
D2WK32 Rhamnose synthase10325e-110
D2WK31 Rhamnose synthase10253e-109
D2D336 Rhamnose synthase10244e-109
B9N7S0 Predicted protein10146e-108

Arabidopsis top hits (Blast detail)Scoree value
AT3G14790.1 RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic11693e-128
AT1G53500.1 MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic11425e-125
AT1G78570.1 RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic10458e-114
AT1G63000.1 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase6462e-067

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  33%
 
121  33%
 
201  33%

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