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Information for unigene UN25217
FASTA Sequence |
Unigene ID: UN25217 | Length: 1214 |
SSR | | GGGAACCGGCCGTTTAATGACCAGAGGTACTTCCTTGATGACCAGAAGCTGAAGAAGCTTGGGTGGGCTGAACGAACCACGTGGGA
GGAAGGGCTGAAGAAGACGATGGAGTGGTACACCGCGAACCCTGAGTGGTGGGGAGATGTTTCTGGTGCTCTGCTTCCTCATCCAC
GGATGCTGATGATGCCTGGTGATAGACTCTGTGATAGCGGTGACGAGCGTAAGGATGCGGATGGGAATCAGACGTTCACGGTGGTT
ACTTCCACCAAGAGTGGTGGTTCTGGAGACAACAAAACGTCGTTGAAGTTCCTCATCTATGGCAAGACTGGGTGGCTCGGTGGTCT
CCTAGGGAAACTATGTGAGAAGCAAGGGATTGTGTACGAGTATGGGAAAGGGAGACTAGAGGACAGAGCTTCTCTTGTGGCGGATA
TTCGCAGAGTCAAACCTACTCATGTCTTCAATGCAGCCGGTTTAACGGGCAGACCGAATGTAGACTGGTGTGAGTCACACAAACCA
GAGACCATCCGAGTCAACGTGGCTGGTACTTTGACTCTGGCAGATGTTTGCAGAGAGAACGGTCTGTTGATGATGAACTTTGCTAC
CGGTTGTATATTTGAGTATGACGCTGCACATCCAGAAGGTTCAGGGATCGGCTTTAAGGAAGAAGACAAACCGAACTTCTTCGGTT
CCTTCTACTCAAAAACAAAGGCAATGGTGGAAAGAGCTTCTAAGAGAATTCGACAACGTATGCACCTTGAGAGTGCGGATGCCGAT
CTCATCCGACTTGAACAACCCACGAAACTTCATCACCAAGATCTCTCGTTACAACAAAGTGGTGAACATCCCAAACAGCATGACCG
TACTAGACGAACTCTTACCGATCTCGATCGAGATGGCGAAGAGGAACCTGAGGGGGATATGGAACTTCACCAATCCTGGAGTGGTG
AGCCACAACGAGATACTAGAGATGTACAAGAGCTACATCGAGCCAAGTTTCAAATGGTCCAACTTCACTTTGGAAGAACAGGCTAA
GGTCATTGTCGCGGCACGGAGCAACAACGAGATGGATGGTGCTAAGCTCAGCAAGGAGTTTCCAGAGTTGCTTTCCATCAAAGACT
CGTTGATCAAATACGTCTTCGAACCCAACAAGAGAACGTAAAAGCCTCGTTCAGATACACACACACACGCACACTTGCTCTTTCTC
TGGTCATTGG
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GenBank top hits (Blast detail) | Score | e value |
NP_188097 UDP-glucose 4,6-dehydratase [Arabidopsis thaliana] | 1169 | 9e-126 |
XP_002882893 hypothetical protein ARALYDRAFT_478892 [Arabidopsis lyrata subsp. lyrata] | 1163 | 5e-125 |
XP_002894444 mucilage-modified 4 [Arabidopsis lyrata subsp. lyrata] | 1161 | 8e-125 |
NP_564633 UDP-glucose 4,6-dehydratase [Arabidopsis thaliana] | 1142 | 1e-122 |
AAK82539 At1g53500/F22G10_13 [Arabidopsis thaliana] | 1142 | 1e-122 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9LH76 Probable rhamnose biosynthetic enzyme 3 | 1169 | 4e-127 |
Q9LPG6 Probable rhamnose biosynthetic enzyme 2 | 1142 | 5e-124 |
Q9SYM5 Probable rhamnose biosynthetic enzyme 1 | 1045 | 9e-113 |
Q5UPS5 Uncharacterized protein L780 | 315 | 4e-028 |
Q8VDR7 dTDP-D-glucose 4,6-dehydratase | 151 | 4e-009 |
TrEMBL top hits (Blast detail) | Score | e value |
Q94AC9 At1g53500/F22G10_13 | 1142 | 9e-123 |
D2WK32 Rhamnose synthase | 1032 | 5e-110 |
D2WK31 Rhamnose synthase | 1025 | 3e-109 |
D2D336 Rhamnose synthase | 1024 | 4e-109 |
B9N7S0 Predicted protein | 1014 | 6e-108 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT3G14790.1 RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic | 1169 | 3e-128 |
AT1G53500.1 MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic | 1142 | 5e-125 |
AT1G78570.1 RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic | 1045 | 8e-114 |
AT1G63000.1 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase | 646 | 2e-067 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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