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Information for unigene UN25220

FASTA Sequence
Unigene ID: UN25220Length: 1484 SSRSNP
GGATAGATTAGAGTAGAAGCAGAGAAAAAAAAAGTTAAAAAGGTAGATCGAATGAACAGAAATGGAGAGGAAAAAAGGAGGAGGAG
GAGGGAGGGGGTTCAGGTGTCCCTCAGAGGAGGCTGCTTGGCTGCTTCAGCCACTGCTATGGCGGTAATGCTGATGGCAAAAGAGG
AGGGTGTAGCTCACGTCTATGGCTTCCCGCTCACTCTCAACTCTAAGTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCA
TGCACGGTGACCATTCTCTACTCCCTGGTCCACCTCTGTCTAGGAATTTACAGGCTCTTCACTGGATCACCCATCACACCCTCCCG
CTCCCAAGCTTGGCTTTGCTTCATCTTCGATCAGGTCTTCAGCTATTTGATAATGAGCGCTGGATCAGCCGCTATTGGAGTAACAA
ACCTCAACAAAACCGGCATCAAACACACTCCTCTCCCAGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCACGTCGCCCTCTCC
CTCCTCCTAGTCTTGCTCTCCTTCATCTTTCTCGCCTCCTCTTCCCTCTTTAATGTCCTTGTGCTCTCCACTCCCTAGTCTTTCTC
TTCTTGTTGCTTTACTTTATACTACTATATTAATCTAAGAGATACTTATTATTATGATCACTTGCATTCCCGAAACCAATGTATTG
TTCTTTCCGAGTGTATTTTTACAAATTACATCCAAGACGTAATCAAATATTGGGTAGAGAGACGTTGATCCCTAGATACGAGAGAT
CCTTGAGGAGGGAATCTGCATTCTCAAAAACTAACCCACGCATCCCAATCTCTACTGCACACTTGACGTTGCTTGGCCTGTCATCA
ATAAATACACAGTCGCAAGGTTCAACACCGAGATGGTGCACAACCTCGAGATAGAACTCAGGATCAGGCTTTCTCTTTCCTGTATG
ACAGGAACAAAAAGTCCATGACAAGTAGGCTGAAAGCTTCAACTTGTCTTCGATCATTTTATACCAGATGGGGTAGTTGGTGAAAG
CAGAATCTCGAAGTCGTCAGCACTCAAAGTTTGGAGAAGATCTTGCATTCCATCTAAGTAAGAGTATCCTGATCTAATACAATCCT
TCAGCCCTTCCAAATCAAAGTCCCTCTTATCAATGAAGAACTTTCTTGCTAGCTCCTCCTCGTCGATCAATCCCTTTTCGAATTCG
ATCCAGGCGGTGGGATGCTTGCACTCGAGTAGCTCCTTCATCGGCATTCCGAAGAAGGCTGGAATGTCTTGGTAGAATGGATCACG
GACGATGGTGTCCATCACATCGAAGAGGAGAACCGGAAGCTTCCTTTTCGGAGCCTCGCTGCGAGCGTAAGAAACCGAAGCCGGAT
CACGCTTCTTCCCGATGCTGCTGTTCGGATTCAGATTGAACAATTCCCCTTTCCGTGTATTCATCGCCGCCACCGCCGCCGCCGTG
GAAGACATCAGAAATGATCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889325 F20B17.20 [Arabidopsis lyrata subsp. lyrata]7488e-077
AAF68111 F20B17.20 [Arabidopsis thaliana]7334e-075
NP_178096 uncharacterized protein [Arabidopsis thaliana]7282e-074
XP_002887859 hypothetical protein ARALYDRAFT_477291 [Arabidopsis lyrata subsp. lyrata]5283e-051
AAM63745 unknown [Arabidopsis thaliana]5085e-049

Swiss-Prot top hits (Blast detail)Scoree value
Q1PFB8 UPF0497 membrane protein At1g797807287e-076
Q3EB59 Putative UPF0497 membrane protein At3g163004222e-040
B9GGL4 UPF0497 membrane protein 134195e-040
A7P756 UPF0497 membrane protein 144186e-040
B9GXD6 UPF0497 membrane protein 144097e-039

TrEMBL top hits (Blast detail)Scoree value
Q8LCB6 Putative uncharacterized protein5084e-049
Q84VZ1 At1g797905066e-049
Q9MA00 F20B17.215066e-049
C6T4S6 Putative uncharacterized protein4242e-039
C6T4W5 Putative uncharacterized protein4242e-039

Arabidopsis top hits (Blast detail)Scoree value
AT1G79780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G16300.1); Has 167 Blast hits to 167 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7295e-077
AT1G79790.1 haloacid dehalogenase-like hydrolase family protein5063e-051
AT1G79790.2 haloacid dehalogenase-like hydrolase family protein4222e-041
AT3G16300.1 integral membrane family protein4222e-041
AT3G55390.1 integral membrane family protein1506e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  27%
 
102  13%
 
112  13%
 
64  27%
 
123  20%

Unigene MembersMember information