Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25231

FASTA Sequence
Unigene ID: UN25231Length: 916 SSR 
GGACAACACATAGAGAGAGAGAGAAAGAAACCTTTTTGCCTTTCACATTCACTCATCTCTCTAATATCACTTTACTCTGATTTAGG
GTTTCTCTCATAAACAGACACTCCGCCATGAACATTTTCAGGAAGAAGACTACTCCCAAAGATGCTCTTCGCACCAGTAAGAGAGA
AATGTCTGTGGCTACAAGAGGTATCGAACGAGAGATTTCATCTCTTCAGATGGAGGAGAAGAGACTAGTTGCTGAGATCAAGAAAA
CTGCTAAAACTGGAAACGAGGCGGCTACGAAAATTTTAGCACGTCAACTTGTTAGATTGAGGCAACAGATTACAAACTTACAGGGA
AGCCGTGCTCAGATTAGAGGTGTAACCACTCACACACAGGCTCTGTATGCGAGCACTTCGATTTCTTCTGGTATGAAAGGTGCAAC
CAAAGCTATGGTTGCTATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTTATTAAGGACTTCCAGAAACAGTCTGCACATC
TAGACATGACGATAGAGATGATGTCAGAGTCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAAGACCTCACT
AACCAAGTTCTCGATGAGATTGGTGTTGGAGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGCATCGCTACAAAGACCGCAGC
TCCTCCTGCATCTACTACTAGCAACAGCTCTGAATCAAGTGAAGTGGATGGGCTTGAAAAGAGGTTGGCTTCACTGCGAAGAATTT
GAGAGTCAGCTTTTATGCATGCTTCTGTATGATTAAATAAAAAACATAACAGCTTCCCTTTTTTTTTTTTTTGCTTGTTGTGATCT
CTGTATAAATCTGCTGAAACTTATTATGGAGGAAGCTTAATTTCCCCAAAAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAE99414 hypothetical protein [Arabidopsis thaliana]10065e-107
NP_199269 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]10031e-106
XP_002862972 predicted protein [Arabidopsis lyrata subsp. lyrata]10031e-106
AAO64783 At5g44560 [Arabidopsis thaliana]9341e-098
NP_001119371 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]9052e-095

Swiss-Prot top hits (Blast detail)Scoree value
Q0WTY4 Vacuolar protein sorting-associated protein 2 homolog 210035e-108
Q941D5 Vacuolar protein sorting-associated protein 2 homolog 37123e-074
Q9SKI2 Vacuolar protein sorting-associated protein 2 homolog 14282e-041
Q54DB1 Charged multivesicular body protein 2a homolog 23816e-036
Q9DB34 Charged multivesicular body protein 2a3791e-035

TrEMBL top hits (Blast detail)Scoree value
B7FHD8 Putative uncharacterized protein8674e-091
B9GIE6 Predicted protein8674e-091
B9SV62 Charged multivesicular body protein 2b-B, putative8513e-089
C6TNT3 Putative uncharacterized protein8479e-089
B9I0U7 Predicted protein8235e-086

Arabidopsis top hits (Blast detail)Scoree value
AT5G44560.1 VPS2.210043e-109
AT5G44560.2 VPS2.29067e-098
AT1G03950.1 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)7122e-075
AT2G06530.1 VPS2.14292e-042

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
112  50%

Unigene MembersMember information