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Information for unigene UN25237
| FASTA Sequence |
| Unigene ID: UN25237 | Length: 1114 |
SSR | | AACAGAATAAGTCCTACACGTGATCTCACGTGATAGAGACGCTACGTGTTTCTCCTCCACCCAATGCCGAACATTTTATGCAAAAA
ATGCCTAATATATGTCCGTCATAACGATGAAAAATAACATGTTTATGATATACAACATGATAGAAACCCTATAAAAAATTCACAGA
TTTTGCGATGCATGATTGAGTGAGTAAAATATCAACCTAGAAAGGTCGAGAAGCTTCTTCCATCATTTTCTTCACTCTCGTCAACT
TCTCTATTTCTTTCAAGACCTCCAAAGCGAGCTCTTCAGAAGTTACTGTTTCCAAGTCTTCCCATCCCAGCTTTGTAGCTATTCTC
TCAAGGGAAATAACTGCATCTGCTGTATCGTAACCCTTTCTTGATTTTTCGTAACTCGCTTTTACTGCGTCATACAACTCAGGGGA
AGGTTCTGAGCTGAATGGATCATCTCCTTTAGCTGCGATTTCGAGAGGAACATCGATCCATATGGAGATCCCGTGTCTTAGAAGTG
CAAGATTTGTCAAGCTCTGGACTGCACCGTCTCCAGCGCAAACTACAAGCCGACCCATAGATGATAGCTGCTTCAGCACTTCAGTC
TCTGATTCATTAAAAGCCATCTCATCAGCCTCCTTCAAAGCTTGAACGGATGAATTTCCACCAGCCGCCTCTGCGATCAACTTATC
ACTATCAAAGTAGTAATATCGTAAAGACTCAGCCAAAAGCTTCCCCAAGTTGGTTTTAATGTGGTTATCAATCCCAACCAGAAATA
TGGAAGCTCCTTTGAGTTGAGGGGATATGTCCACAGCTTTCCTCTTAACAGCATCGATGGGATCTGAATCAACAACATTGATCCCG
GTGGAGGCAGACTGATCGGCGAGATACGGAGACGGAGCTATACGTCTGTGTGGAGAAATGAGTTTAACAGAGGAAAATGGTGCGGA
GGAAGTAGTTCGAGCTTGAGGAGGATAGAACAAGGGAGGAAGAAGTCGAGGAACGAGTCCAGAGGAAGTTAGAGAAGCAGACGCAG
CAGAGATCTCCATTGACGAACGACCAAACTCCTCCTCCTCTCTCTCTCTAGTCTCTCTAGATATCCGCCACGTATGCCCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189325 shikimate kinase like 1 [Arabidopsis thaliana] | 1069 | 3e-114 |
| XP_002877000 shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] | 1069 | 3e-114 |
| XP_002328924 shikimate kinase [Populus trichocarpa] | 721 | 7e-074 |
| XP_002512880 protein with unknown function [Ricinus communis] | 681 | 3e-069 |
| XP_002273840 PREDICTED: hypothetical protein [Vitis vinifera] | 481 | 5e-046 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q00497 Shikimate kinase, chloroplastic | 268 | 1e-022 |
| Q9SJ05 Shikimate kinase, chloroplastic | 262 | 5e-022 |
| B0JFW8 Shikimate kinase | 233 | 1e-018 |
| Q31PU5 Shikimate kinase | 217 | 9e-017 |
| Q5N4D3 Shikimate kinase | 217 | 9e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LW20 AT3G26900 protein | 1069 | 2e-114 |
| B9N0W2 Shikimate kinase | 721 | 5e-074 |
| B9RH21 Putative uncharacterized protein | 681 | 2e-069 |
| C6TEY0 Putative uncharacterized protein | 442 | 1e-041 |
| C5YPX9 Putative uncharacterized protein Sb08g018630 | 439 | 2e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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