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Information for unigene UN25279
| FASTA Sequence |
| Unigene ID: UN25279 | Length: 754 |
SSR | | GACTAAAATGCTTCGTCTTTCTTCCCTGGAGATGTTTCCATCACAACAACATCACTAGCTTTCTCCTTAGGAGCCACCACTATCTC
ACTCGGATTAGGGTTTGGGTTTAGACCTGAAGGAGTAAGAGATGGCTCCTCCATTTCAGCATCAGAATGTGGCTCGCTTTCCCCTG
AGTCACCGCTTGAATCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCAGCTTCTTCCATTGGAACTTCAGCA
ATCTCTACGTTTTGCTCAGGAAGCCTCTGCTGCAATGGAACAGCATTGCTTATAAGCTGTCCTGTCCTAAGCTTCTCTCTGTAGTC
TTCCATTTCAGTTCGATACCTCTCTTTGTCCTCCATTGCCTTCCCTTGGTAAACCAATCTCTCTTGTTCATTAAGCTTGTTCCAGA
GCTCACCAATCATCCTGCTGATCTCCCTATCCTTACCGGGATGCAGCGGTTTCAGCCTTGCGTGCTGCTCAGCGAAAAAGAAGTTA
TAACCGCTTCTGTTAGGTTTAGGATGGGCAGGATCACGTCTTTTGATCTCTGACTTCTTCCTTCTCCTGCGGCGTTTCCTCACTCC
TCCAGTAACAACCCCCTGAGGATAAGGACCATTGTTGTTCCAAGTGTTTGGGAAACCACCATGATGACTCTGTTGTGGAGTTTGAT
GAGCAGCAACTGTGTTCTCTGGAACAAGCTGGTAGAGAACTCCTTTAAGCTTTTCTGATCCCATTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892249 high mobility group family protein [Arabidopsis lyrata subsp. lyrata] | 912 | 3e-096 |
| NP_171980 high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] | 907 | 1e-095 |
| XP_002518095 transcription factor, putative [Ricinus communis] | 530 | 5e-052 |
| CAN83439 hypothetical protein VITISV_021289 [Vitis vinifera] | 528 | 9e-052 |
| XP_002266394 PREDICTED: hypothetical protein [Vitis vinifera] | 528 | 9e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P10103 High mobility group protein B1 | 190 | 6e-014 |
| P12682 High mobility group protein B1 | 189 | 8e-014 |
| B0CM99 High mobility group protein B1 | 187 | 1e-013 |
| B1MTB0 High mobility group protein B1 | 187 | 1e-013 |
| Q6YKA4 High mobility group protein B1 | 187 | 1e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9MAT6 At1g04880 | 907 | 7e-096 |
| B9RWH6 Transcription factor, putative | 530 | 4e-052 |
| A5BNN4 Putative uncharacterized protein | 528 | 6e-052 |
| B9GFX2 High mobility group family (Fragment) | 492 | 9e-048 |
| C5Y176 Putative uncharacterized protein Sb04g017850 | 415 | 8e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G04880.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein | 907 | 4e-098 |
| AT1G76110.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein | 297 | 2e-027 |
| AT3G13350.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein | 251 | 5e-022 |
| AT1G55650.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein | 159 | 2e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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