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Information for unigene UN25292

FASTA Sequence
Unigene ID: UN25292Length: 954 SSR 
GGACATTCCTTCTTCTTCTTCACAACTCTCTCTCTCTCGAAAAAAAAAAGTCCCTCTTCCTAGCTCGATTTCGATCTCAACTTTTC
GTGTGGAAACGTTTGTGAATGGCGGAAACGAATCCGATCAGTGGTGAGTTTACGCTTTCCCTTCAAATCCAAAGGGCGAGCTTCCT
CCTCCTCCCTCACTCTGCGTTGATACCACTGCTTACGGCCGGGGGGCCGTCAGTTCTACAGAAACTGCGTCGTATCAGGAACAGTC
GACTTCATCTTCGGCAAATCCGCGACAGTCATCCAAAACTCACTCATCGTCATCCGCAAAGGAAACAAGGGACAATACAACACGGT
CACAGCCGACGGAAACGAAAAGGGTCTATCCATGAAAATCGGTATCGTCATCCAGAACTGCCGCATCGTTCCCGACAAGAAGCTAG
CGGCGGAGAGGCTGACCGTTGAGTCGTACTTGGGAAGGCCATGGAAGCAGTTCTCGGCCACCGTTGTGATCAACACTGAGATCGGA
GATGTGATTAGACCAGAAGGGTGGAGAATGTGGGACGGAGAGAACTTCCACAAGTCATGTAGGTACGTTGAGTACAACAACCGTGG
ACCGGGAGCTATCACCAATAGGAGAGTTAGCTGGGCTAAGGTCGCTAGGTCTGCTGGTGAGATTAATCAGTACACTGTGGCTAACT
GGTTGGCTCCGGTTAACTGGATTCAAGAAGCTAACGTACCTGTCACGCTTGGATTATAAAGCGTATAAAAATCATTTGAATAAAAG
AAAAAAAAAAAGACTAGTACGTGTACGTGTGTCGTCCATGTAAAAAGTGAAAACTACATTTTCGATAGAAAGTTGTAAGATTCGCT
TTTTGTTTGTCTCACTCTCACGTACTAAAAAAAATTGAAAATTTATGTTTGTTTATTTTTTTATTTGTATATTTTCAAAATATGAA
TTTTATCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABC25451 pollen development related protein [Brassica rapa subsp. chinensis]8669e-091
NP_182227 pectinesterase 5 [Arabidopsis thaliana]8542e-089
CAB58974 pectin methylesterase [Arabidopsis thaliana]8542e-089
AAV91508 VANGUARD 1 [Arabidopsis thaliana]8452e-088
XP_002882102 pectinesterase family protein [Arabidopsis lyrata subsp. lyrata]8165e-085

Swiss-Prot top hits (Blast detail)Scoree value
Q5MFV8 Pectinesterase 58549e-091
O80722 Pectinesterase 48153e-086
Q5MFV6 Probable pectinesterase/pectinesterase inhibitor VGDH27105e-074
P41510 Probable pectinesterase/pectinesterase inhibitor6863e-071
Q42608 Pectinesterase/pectinesterase inhibitor (Fragment)6541e-067

TrEMBL top hits (Blast detail)Scoree value
Q2PYP0 Pectinesterase8666e-091
B9DHJ2 AT3G62170 protein (Fragment)5342e-052
B9SRK1 Pectinesterase-4, putative4931e-047
B9GZH6 Predicted protein4875e-047
A4PU28 Pectinesterase; Pectinesterase inhibitor4832e-046

Arabidopsis top hits (Blast detail)Scoree value
AT2G47040.1 VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase8557e-092
AT2G47030.1 VGDH1; enzyme inhibitor/ pectinesterase8162e-087
AT3G62170.1 VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase7113e-075
AT4G03930.1 enzyme inhibitor/ pectinesterase3862e-037
AT3G27980.1 pectinesterase family protein3762e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  33%
 
71  33%
 
181  33%

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