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Information for unigene UN25309

FASTA Sequence
Unigene ID: UN25309Length: 790 SSR 
GGACGAAAACAGCAAAGGAGAGCTGATATCTGCACATGGATTCCTCTCCCTCTCTCTCTCTCTCTGTGTAAAAACATAAAAGCGAA
CAGAGACTATTCAACAATACCCAGTAGTCCTTACCCAGCATCAGAGATTTCTTCTAACGCGAAAAGGTCTCGCCCTTTGGGAGGGC
AAAGATGAATTCGATTTTCTCTCGTAGAGTCGTCGTCGACTCATCCTCGCGTCTCACCAAACTGCTCGCGAACCCACCCAATCACC
ACTCCTCCTTCACTTCCATCTATCGACCGAGCCAGACCCGCCATTTTCGGACCCACTACCTTCCTTCGACCCCATCTCCTCCTCTT
CCCGCGAGCCGCTTCGACCCTTCTCTCCTATGGCGATCGGAGAAGATTCGTGGGTTTTTCGCTGGCGCTCTGACGAAGAACAAATC
CGTTAAACTGGGGAATCTCGTGGAATCGAAAGTTGTGTTCTTCCGTTCTCAGTTTCCCAGAAAGGGTTTCGAGTTCGGAGGCTATT
CTGGGAGGCGTGGATGGAAGAATTGGCTTCAAGGGTTATCATCTAATGACGTTGTTCTTGGATTACTATTAGCTAACGCTGGTGTC
TTTATCATGTGGCGTGTTTCGACCAACGTTTCATGATGAATAATTTCATGATATCGTTGGACAATTTCACCAGTGGACGTCTACAC
ACTCTGATAACTTCGCATTCAGTCATATTGATATTGGACATATCGTCTCAACATGATTGGTCTCTACTTCTTTGGAACCAGTATCG
CAAGAAACTTTGGCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564058 RHOMBOID-like protein 12 [Arabidopsis thaliana]5924e-059
XP_002890288 rhomboid family protein [Arabidopsis lyrata subsp. lyrata]5646e-056
XP_002265768 PREDICTED: hypothetical protein [Vitis vinifera]1972e-013
CBI15323 unnamed protein product [Vitis vinifera]1972e-013
CAN61730 hypothetical protein VITISV_019858 [Vitis vinifera]1758e-011

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9FZ81 F25I16.6 protein5923e-059
B3H707 Uncharacterized protein At1g74140.52634e-021
B6EUB0 Putative uncharacterized protein At1g74140.12634e-021
B6EUB8 Putative uncharacterized protein At1g74140.42634e-021
Q1PFD6 Putative uncharacterized protein2634e-021

Arabidopsis top hits (Blast detail)Scoree value
AT1G18600.1 RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)5922e-061
AT1G74140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 484 Blast hits to 484 proteins in 189 species: Archae - 2; Bacteria - 267; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).2632e-023
AT1G74140.4 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 394 Blast hits to 394 proteins in 153 species: Archae - 6; Bacteria - 196; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).2632e-023
AT1G74140.5 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 536 Blast hits to 536 proteins in 206 species: Archae - 2; Bacteria - 298; Metazoa - 30; Fungi - 50; Plants - 36; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).2632e-023
AT1G74130.2 rhomboid family protein2462e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
95  83%
 
121  17%

Unigene MembersMember information