Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25314

FASTA Sequence
Unigene ID: UN25314Length: 1016 SSR 
GGACCGAGAAAGATTGTTCCCGTCTCCGACGACAAAGCAGACCTACGTGCGACACCCCTTGAGATAGAGAGATAGAGAGAGAGAGG
GAAAAATGGGTTTCTTCTCGTTTCTCGGAAGAGTTCTCTTCGCTTCTCTATTTATCCTCTCCGCTTGGCAAATGTTCAGTGACTTT
GGATCTGACGGTGGTCCAGCAGCTAAAGAGTTGGCTCCAAAGCTTCACCTGACCAAAGCACAGGTCTCTTCCAGATTAGGAGTAGC
ATTGCCGGACATTGAGGTGAAACAAGTCGTATGGGCAATTGTTGCTCTGAAAGGACTCGGAGGCTTACTCTTTGTTGTTGGGAACG
TCTTTGGTGCTTATCTTCTGGCTTTCTACTTGGTGATCGTTAGCCCCATCTTATATGATTTCTACAACTATGGACCTCAGGACCGC
GAGTTCTCTCTTCTCTTTACTGAGTTTTTGCAGAGCGTTGCACTTCTTGGGGCATTGCTGTTTTTTATCGGAATGAAGAATGCAAC
GACAACCTCCTCCTCCTCCTCCTCCCAGAGGAACCTGAAGAAGAGGATACCCAAGCCTAAAGCTGCTTAGAGTTCTTCTTCTGGTC
TCTTCCGCACAAATGTGTTGAGGCTTTTAGAACAACAGCTTCTGATGTCTTCAAAAGCTCTACCTTCTGCTTTTTTTTCTTCCTTA
CAACCTTTGCTTCTTTTTCTACTGTGGGATTCTAGAGTTAGCCACATTTTGTAATTTCTCTTCTGGTTTTTATTTTATTTTGGAAT
CTAAGAGTTTTCTTTTGTTGGAGGATCATACAATTCTTTCTCGTTTTTTAATATTAATTTTGGTTCATCTGTTTTGATAAATTCTT
TCAACTGGCAACCAAAGGTGAGAAGGAAGTCTTTTTGAGGGTCATCTGCTTCTGCTTGTGATAAGCTAATTGTGTGTTGGTCTTAC
AGAACTTTTTTTCTTCAAAAGATTGTGCGTCTGATACATAAAGTAAAAAAAAAATATTATGACACTTATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_171929 HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]6751e-068
XP_002892210 hypothetical protein ARALYDRAFT_887596 [Arabidopsis lyrata subsp. lyrata]6581e-066
ACG24094 nicotiana lesion-inducing like [Zea mays]6321e-063
NP_001147050 nicotiana lesion-inducing like [Zea mays]6222e-062
XP_002862554 hypothetical protein ARALYDRAFT_497403 [Arabidopsis lyrata subsp. lyrata]5845e-058

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O22690 At1g04340/F19P19_236759e-069
B6SGW1 Nicotiana lesion-inducing like6329e-064
B6SK94 Nicotiana lesion-inducing like6221e-062
Q8LBI4 Nicotiana lesion-inducing like5817e-058
Q9LSW5 AT5g43460/MWF20_185612e-055

Arabidopsis top hits (Blast detail)Scoree value
AT1G04340.1 lesion inducing protein-related7015e-074
AT5G43460.1 lesion inducing protein-related6164e-064
AT4G14420.1 lesion inducing protein-related4103e-040
AT3G23190.1 lesion inducing protein-related1272e-007
AT3G23180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT3G23190.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1235e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  29%
 
122  29%
 
102  29%
 
201  14%

Unigene MembersMember information