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Information for unigene UN25331
| FASTA Sequence |
| Unigene ID: UN25331 | Length: 1211 |
SSR | | GGACTCTCAACCCTATCTCTTCCTCCATGGCTGCTTCGGCTTCCTCTCTCGCTCTCTCCACCTTCAACCCTAAATCCCTTCCTTTC
TCCATCTCCAGACCCGCCTCCACTCCCTTCCTCCCTCCTTCCCTCTCCTTCAAACTCAACCACCAATCCATTTCCCTCTCCGTCTC
CGCCGCGTCTCGCTTCGTCCGCAACGTTGCCGTCACAGATGACATCAACGTAGAAGAAGAAGACAGCCTTTTCTCCGATGACGACG
CTGCCCCTCCTCCTCCGCAGCAGGAGCAATCCTTCTCTGCTGACCTCAAACTCTTCGTTGGTAACCTCCCCTTCGACGTCGACAGT
GCTCAGCTCGCTCAGCTCTTCGAGAGCGCCGGAAATGTCGAGATGGTTGAGGTGATATACGACAAAGTGACAGGACGAAGCAGAAG
TTTCGGGTTCGTGACTATGTCTTCAGTGTCTGAAGTTGAAGCAGCTGAGCAGCAGTTCAATGGCTATGAGTTAGATGGTAGAGCCT
TGAGAGTTAATGCTGGTCCTCCTCCACCGAAGAGGGAAGACTCCTTCTCCAGAGGACCCAGAAGCAGCTTTGGAAGCTCCGGTTCT
GGATATGGTGGTGGTGGTGGTGGTGCTGGTTCAGGAAACCGTGTTTATGTCGGCAACCTATCTTGGGGAGTCGACGACATGGCTCT
CGAGAGTTTGTTCGGGGAGCAAGGAAAAGTAGCTGAGGCTAGAGTCATTTACGACAGGGACAGTGGTCGATCTAAGGGTTTTGGGT
TTGTGACGTACAACTCTGCTCAAGAGGTCCAAAATGCCATCAGAAACTTGAATGGTGCCGATTTGGACGGTAGACAAATCAGAGTC
TCCGAAGCTGAGGCTAGGCCTCCAAGGCGCCAGTTTTGATCACCACCCTTCCTATTCTCATTAAACGCACTTTCTGGAGGGCGCTT
CGAAGAATATAGAGTTATGTGAGAGGATGGCTGTTTTTGGACCGTACTAAGCTCTTCACCTATGTTTGTTATGCAATGGATGCACG
AGTGGTCTTTTTATTAGAAACGTATTAAGTAAAGGTTATGAGTGAAGAACATGTTCTCGACTGTCTGTGTTCTGCCATTGACTACT
TAGCTTTGGTTTGATTCGGGTTTCTCTCTATTTTGTGGTCTCTTCATAATGAATGCTTCTCTGTTTAACAGTCTAATTTAAGTCTT
TTTCACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 1216 | 3e-131 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 1198 | 4e-129 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 1194 | 1e-128 |
| XP_002281642 PREDICTED: hypothetical protein [Vitis vinifera] | 797 | 1e-082 |
| P49313 RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor | 755 | 9e-078 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 1194 | 5e-130 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 776 | 1e-081 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 746 | 4e-078 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 743 | 1e-077 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 737 | 5e-077 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 1198 | 3e-129 |
| Q7GA50 Putative RNA-binding protein | 1194 | 8e-129 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 815 | 7e-085 |
| Q8W214 Single-stranded DNA binding protein | 793 | 3e-082 |
| B9MTC6 Predicted protein | 748 | 4e-077 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 1195 | 3e-131 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 546 | 6e-056 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 546 | 6e-056 |
| AT3G52380.1 CP33; RNA binding | 419 | 3e-041 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 272 | 4e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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