Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25379

FASTA Sequence
Unigene ID: UN25379Length: 840 SSR 
GACTCCTCTCCGCCGTCTACACTCTCTCTCTCTCACTTATCATCATCACACACACTCTCTGCTTCACAAGAAGAGCTTTCTGATTC
GCCTCTGTTGTTTCTGCTTCTGGTTGATACTTTCAGCTTAACCTCCAAGTCGATCAATATGTCAATGACGGAAGAAAGTAAGATGA
CGAAGCTCGAATCGGCGGGAGACTCTTCGGATGTGGAGAACGGGAACTGTAGCAGTAGCGGAAGTGGAGGAGGAGGAGGCGATACT
AAGAAGACGTGCGTTGATTGCGGAACGAACAAGACTCCTTTCTGGCGTGGTGGCCCTGCTGGTCCTAAATCATTGTGCAATGCGTG
TGGGATCAAGAGCAGGAAGAAGAGGCAAGCAGCTCTTGGGATCAAACAAGGGGATAATAATAAGATGAAGAACAACAAAAGTAACG
ATAGCTGTCTCGCTCTCGACAATCAGACGGTCAAAAACGGAAAAGGCGATTCAGGAAACGTTAAAAACAAGATCAAGACGGAGACC
GAGGATTGTAACGACAAGAAGAGTGTCAAAAGGGGGAGTAGATTTTTGGATTTAGGATTTAAAGTGCCGGTGATGAGGAGATCGGT
GGTGGAGAAGAAGAGGGTATGGATGAAGCTGGGTGAAGAGGAACGAGCAGCAGTACTTCTCATGGCTCTTTCTTGTGGTTGAGCTT
TTTTTTTTTCTCAACTCCCTTTTTTTGGTCGGAATGGTTTAGGAGAAGAGATTAGGGCAAATAAAGAAATGATGAATTTTTATGTG
TAATCCTGTCTGAAGGCTAAAGCTAATGTTATGCTACTTACTAATTAATTAAATTAATCGTTTTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868160 hypothetical protein ARALYDRAFT_329901 [Arabidopsis lyrata subsp. lyrata]6732e-068
NP_188312 GATA transcription factor 17 [Arabidopsis thaliana]5469e-054
NP_680707 GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]4222e-039
XP_002885174 hypothetical protein ARALYDRAFT_479155 [Arabidopsis lyrata subsp. lyrata]3837e-035
XP_002330240 predicted protein [Populus trichocarpa]2521e-019

Swiss-Prot top hits (Blast detail)Scoree value
Q9LIB5 GATA transcription factor 175464e-055
Q8LG10 GATA transcription factor 152104e-016
Q9FJ10 GATA transcription factor 162078e-016
Q9SZI6 Putative GATA transcription factor 221791e-012
Q8LC79 GATA transcription factor 181692e-011

TrEMBL top hits (Blast detail)Scoree value
Q0WPA1 Putative uncharacterized protein At3g168705466e-054
Q8GW81 Putative uncharacterized protein At4g161414221e-039
B9N4N6 Predicted protein2528e-020
C6T5X2 Putative uncharacterized protein2473e-019
B9RZK8 GATA transcription factor, putative2331e-017

Arabidopsis top hits (Blast detail)Scoree value
AT3G16870.1 zinc finger (GATA type) family protein5464e-056
AT4G16141.1 sequence-specific DNA binding / transcription factor/ zinc ion binding4362e-043
AT3G06740.1 zinc finger (GATA type) family protein2103e-017
AT5G49300.1 zinc finger (GATA type) family protein2077e-017
AT4G26150.1 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor1791e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  100%

Unigene MembersMember information