Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25413

FASTA Sequence
Unigene ID: UN25413Length: 1193 SSR 
GGAGTGCTCCACTCAATCTTCTTCTTTCACCAAAACAACAGCTGCTAGGGGGAGAGAGAGAGAGCCAAACTCCATCCCTCAAGCTC
TCAAGGGAATCAAGCTCCAAATATGAGCAGTTTCTACGAGCATTACGAGTTCCCATACGATACCAACCAGGTTAATCATCTCTATG
ATCATAACTATTATGATAACAATCAACGTCAGCAGTTTGGTTTTGATCCAATGAGTTACAATAATAGTTATGATAACTGGAATGGA
TCCGAGTATGAGTACGAGTATGAGACAGCCTCTGCATCTGTTGCTTACTCTGTCTCCACCATGTCTGAGCCGAAGCACTTGTTCTA
TGATCCGAGTTACTACACAACAACGACAACCTACGAGTCTCCTCCCCAGTTTAGTATCTATTGCAATGTTCAAGGCTTCAACGAGC
CGGAGTTCGAGGAGTACGATCCGACGCCGTACGGTGGCGGTTACGATATAGTTGCAACTTACGGGAAACCTCTTCCTCCGTCGGTA
AAAACTTGTTATCCTTCTTCAACCGCTGATCAGGGTAATCCTCCTTCTCCTCCGGAGATCATCACTCCGGTTCCTCTTGGAATCTA
CGGTGGTGGTGAAGAAAAGAAAGCTGTCAAGAAACGTGTGACTTTCTCTGAGCCGTTAGAGGAAGCTAAACCATTAGAAACCATTA
AAGAAGAAGAAGAACATGATCATCAAGAAGAGGCAGAGGAAGAAGATGAAGAGGAAGAAGAAGATCACAGTTCAAACAATGAAATT
GTAGAGAAGATTGAAGTGAAAGCTTTGTATGTGCCATCTGGTTATGGCTTAGAAGCCACGGATTTCTGTGAGGTTATATTCGGAGG
CTATTTTCCTTGCGTCTTACGTAACAAAAAACGCCAAGAGGATGAGAAACGTGCGGCTGAAGTTACTTGCTGGGAATGCACAGATT
TTGATCCGTGGAAGACGACTTCAGACTACCTTTTTGGGGACTCATATCCGTATGATTATGAGGACGGAGTTGGAAGAAGACAGTTC
GAGATCTCCTCTTATGGTTACCAGAGGTATTAACCGGAGTCATGATCATCAGTTGTGTCAAAGTTATGTGGTGAGAGCAATATTTT
TTGATAATTGATGAAGCTGATTCGTTTTAGTATATACAGTGACCTTTCTTGTAATGTTTTAAAGGAAACTAATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889868 hypothetical protein ARALYDRAFT_471281 [Arabidopsis lyrata subsp. lyrata]6842e-069
NP_172611 uncharacterized protein [Arabidopsis thaliana]6572e-066
XP_002518589 conserved hypothetical protein [Ricinus communis]4011e-036
XP_002316699 predicted protein [Populus trichocarpa]2943e-024
CAN76854 hypothetical protein VITISV_006002 [Vitis vinifera]2494e-019

Swiss-Prot top hits (Blast detail)Scoree value
Q9FKA5 Uncharacterized protein At5g395701497e-009

TrEMBL top hits (Blast detail)Scoree value
Q9LPZ0 At1g114406571e-066
B9RXX0 Putative uncharacterized protein4017e-037
B9HYT2 Predicted protein2942e-024
A5BG40 Putative uncharacterized protein2493e-019
B9H1W5 Predicted protein2332e-017

Arabidopsis top hits (Blast detail)Scoree value
AT1G11440.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 22740 Blast hits to 8622 proteins in 417 species: Archae - 22; Bacteria - 573; Metazoa - 11353; Fungi - 2147; Plants - 905; Viruses - 631; Other Eukaryotes - 7109 (source: NCBI BLink).6578e-069
AT3G29075.1 glycine-rich protein1424e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  67%
 
111  33%

Unigene MembersMember information