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Information for unigene UN25452

FASTA Sequence
Unigene ID: UN25452Length: 1027 SSR 
GGGGTCTGAGATGGACGGTAGTCGTCGTTTCACACTTTCTCCGTCAACCATTCTACTTCTCCTCTCCTCTAAAAAAGCAATGGCCT
TTCGACCTCCATCATTGGCTCTTTTAAGCCTTGACATGAAAAGTCCATTACTTGTAATATTATAAACCATAAGTTTATTCCCGTTT
CTTCTTCTCACCACTCGTTAATCTCTTTCCTCTGTCGTCTTCCTCTCACCGCCTCTCTCCCTTGATTTTTTTTTTTTCTTTTATAT
TTATCCAAACAATCATTTTTAAGATACCTTTTTTTTTTTTGGAAAGACTATGGCTTTGTTCGTGAGCTTGATCTTAGGGATAATCG
CTGGATGGTTAGCTTTCGTTGTTGGGTTGCTCATAGGATGGGCATGGAGACCCAGATGGGCTTCTTGTTCTGATAAGGAAAGAGTC
AAACTTCAGTGTTGTGCTCCTCGATCTTTTGATTTGTCTTTACCATCGTCTCCCTCTCCTCGTTCCGCAACTTCTCCGTTAAAGGG
CTTTGGTTCTGCTCCTTGCTTGAAAGCTCTTGTCTGCGACACGTGGACTATGGCTTTGAGACAGCAGAAAACAGTCTCCCCTGTTT
CTTCTTCTTCTTCTTCTTCCTCTTCATGTGATGATGTGATTGCTGGAGGGAAGAAAACAGAGGAGAGGTTGCCTAATACTGTGACA
GAGTTAGATTTGAGACATCTTGTGCAGTTGGTTGAGAGGAAAGATGGTGGTCATGCTTGGATTCAGATGATGGACCGGTTTACTCC
TGGTATGAGATACCAAGCTTGGTTAAGAGAACCTAAGAATGGTCCTACTGAGTATAGAAGCAGGACTGTGTTTGAAGATGCAACTC
CTGAGATTGTAAGAGATTTTTTCGGGGATGATGAGTTCAGACCAAATTGGGATACGATGCTCTCTAGTTCAACTACTGTTGAAGAG
TGCACAAGTACTGGAACCATGATTGTTAGATGGATACGCAAGTTCTCTTCTTCTGCAGTGATAGAGAGTATGTGATTGGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866025 hypothetical protein ARALYDRAFT_918536 [Arabidopsis lyrata subsp. lyrata]9806e-104
NP_568805 Lipid-binding START domain-containing protein [Arabidopsis thaliana]9734e-103
AAM65221 membrane related protein-like [Arabidopsis thaliana]9691e-102
BAB11579 membrane related protein-like [Arabidopsis thaliana]5513e-054
XP_002278777 PREDICTED: hypothetical protein [Vitis vinifera]4762e-045

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LAQ0 Membrane related protein-like9698e-103
Q9FK24 Membrane related protein-like5512e-054
Q8W255 Putative nodule membrane protein4527e-043
B9HKF0 Predicted protein4275e-040
Q944M2 AT4g14500/dl3290w4232e-039

Arabidopsis top hits (Blast detail)Scoree value
AT5G54170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: CP5 (TAIR:AT1G64720.1); Has 233 Blast hits to 233 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).9731e-105
AT4G14500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).4239e-042
AT4G14500.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1).4221e-041
AT1G64720.1 CP53979e-039
AT3G23080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).3557e-034

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  67%
 
111  33%

Unigene MembersMember information