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Information for unigene UN25455
| FASTA Sequence |
| Unigene ID: UN25455 | Length: 1240 |
SSR | | TTCAGAAATTATGTATTATGAAGTGGTTTAACTACAATAATGAAAAAATTCCAGATTAAAACAAATATAGGATCCGTTTTCTCACT
CTCTCGACTCGAAACAAAAATTTGGTGGTCTTCTTGTAATCAGTCATCGTGCAATGCCTTGGTCAGGTAGAGCCTGCTGAAGTTCT
GGCCAGCCACTCCATTGATTTGACCACAGAAGTTTGAGACTTGGTTTGTGATGAGGAAACTCTCTAGCCTTGATGGTTCAGGGATT
GGCTTAAAGATTGGGTTTGAAGGATCCTCTTCGGGTAAAGGCTCTTCTCCAGCTGATCTACGACCCATATTCTCCGTCCTCCTCTT
CTGGAGCCAGGCTTGCTGCTGCGCTTGCTGACGAGACAGGTTCCGGTAGTAATATTGGAACTTCTGCTGTTCCATAGATAAATCAT
CCATGCATTTAATCAGAAACTCCATATTGTTCTCAAGGAAAGGAGTGGTTGATGAGTGTAGCCGATCATAATCACCCTGTGAGACA
GGTGCATCAGTCTCCAGTTCAGTCATGAAGGCACTGACAAGCGCAGAGTTTGAAACTTAATGGGAATTTCCTCAAAAATATCCATC
CAGGAGAAGTTTTTCTCTCTCAACTTCTCGCCTGTAAAGTTTCCGGCCCGGTATAGCTCCATAAAGGAATCTGAAAGCTTCAAAGC
CTTCAAAGCTAAGACGCCTAAGTCAGCTTTAGAGGGATCATAGATGATGCAGACACACCTCTTGATATTCTCCTGGTAATTCATGA
AGGTCTCAATCAATTCAACGGTCTGATAGGATCCAAGAACTGTGGATTGATACCAGCCGACAGTGTTGTTGTCGACATTAACCTCT
CTCAGACATCTCATCATTTCAAGCTGATAATTAGCACCATCAGCTTCAATTTCCTCATCGTCATCCCTGACAGGGAAAGGAAAACA
ATTGGTGACTTCAAGGACACTACCAACGTCGAGTCCAAGAAGCTGTCCTGTGACAAGCGTCGGTGCAAACTCCTTGCAGTGTTTGA
TTATCTTTAGCACAGCCAGTCCTTCGATCTGAACAACTCTGAGCGGAGGAGCGACCACCTCGTCCTTCGATATAGCCTGCAAAAAC
GACCTAGCCATGGTTGCCATTGAATAGTGTGATTTAGGGTGATGATGATGATGAATGCTTGACTGAGATTCGCCGCTGTGAATCCC
TAACTGATTTGGTATTTCTTTGCCGCCGGCGGAGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563880 translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana] | 964 | 6e-102 |
| XP_002892604 TIF3H1 [Arabidopsis lyrata subsp. lyrata] | 964 | 6e-102 |
| AAG53614 eukaryotic initiation factor 3H1 subunit [Arabidopsis thaliana] | 961 | 1e-101 |
| XP_002266909 PREDICTED: hypothetical protein [Vitis vinifera] | 849 | 1e-088 |
| ABN08818 Mov34-1 [Medicago truncatula] | 848 | 2e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C5Z2 Eukaryotic translation initiation factor 3 subunit H | 964 | 2e-103 |
| Q54UD0 Eukaryotic translation initiation factor 3 subunit H | 504 | 5e-050 |
| A7SA47 Eukaryotic translation initiation factor 3 subunit H | 411 | 3e-039 |
| Q5PPY6 Eukaryotic translation initiation factor 3 subunit H | 381 | 1e-035 |
| Q6P381 Eukaryotic translation initiation factor 3 subunit H | 377 | 3e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2Q5B8 Mov34-1 | 848 | 1e-088 |
| B9SUY5 Eukaryotic translation initiation factor 3 subunit, putative | 845 | 2e-088 |
| C6TN20 Putative uncharacterized protein | 843 | 4e-088 |
| A9P7W5 Putative uncharacterized protein | 840 | 9e-088 |
| B9IA95 Predicted protein | 830 | 1e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G10840.1 TIF3H1; translation initiation factor | 964 | 2e-104 |
| AT1G10840.2 TIF3H1; translation initiation factor | 749 | 2e-079 |
| AT5G23540.1 26S proteasome regulatory subunit, putative | 121 | 1e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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