RadishBase

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Information for unigene UN25488

FASTA Sequence

Unigene ID: UN25488	Length: 1305	SSR	SNP
GGATCCTCATCGTTTCGCCAGAATGCTCATCAGAAACAATCTCCTTTGTTTCTCCTTGATGTCTTTTCTCTTCTAAGCTCCTCTGC GAGACAAAAAAGGCAAAACAGAGATCCAAAAGACAGAGGAGAGAGAGATAGATAAGCTATCTATGGCCGCCGCCGCTATGACCGAG AAGGAAGCTAAGGTGGATCCTTTCCTGGTCGAGGCTCTCCAGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTCGATAT ACAAAAGTTCTTTCAAAACCCTGACCAGCTTCAGTTCGAGTTCCAACCCTTTCCGACATCATACCTGCGTCTCGCTGCGCATCGAG TCGCTCAGCATTACGGACTAGTAACCATGTCTTTGGAGAACGGTAACGGTGCTTTAGACGGATCCGACAACAGAATCCTGGTAACG AAGACAGCGGAGAGCAGGTTTCCTCATGTCTGCTTGTCTGAAATCCCTGTTAAGCAGCCTGAGAACGGTAGACCAGAGGGTTTCAA GATCGCCATCAAGGCTAGACCCAAGAGGGGATCTGGGAGCGGAGGTAGCGGGTCAGGAGTGCAGCAGAATCTTCTGAGGAGTGTCG AGGAGAGGAAAGAAGAGTATGATAAGGCCCGTGCTCGGATCTTTAATAGTCCCAGCAGTTCTGACTCTGAAGAGTCTTCGTCGCTA CTACGAGCTCCTCCTCCTCCTCCTCCTCCTCTTGAAGGTGTAAACCGGAATGAGACTGAAGTGGCGGTTAGTAATAGTTCTCTTGA TGCTGGTTCTCGTACTTCTAGAGTAGCTATTATCAGAGATAGAGAGAAAGATCGGTATGATCCTGATTATGACAGGAGCTATGACA GATATGTCGTGGATCCTGCCTACAGGTACATTAGGGTTATGCCACCTGGCCAAAGCTTCAGTCCGATGCCAATGCACATTCCGTTT CACGATGGAGGCTTCCCGCAGATGCCAAGAGGTCCTCAAGCTAATCTAAACTACGGGCATCCGGCTATGAGTCCCTTTGTTAACAG CCCGGCTGCTTATACACCGTGGCCAAACCTGCCCTCTATGAACTATGTGCAGTCGTTGAACCGTCCAGACTTCAGGCATCCTTCTG CAAGCAATCCCTGACGACAGTTTAGTGTTTTGAGTACTTTCAATGTCTGTATTGAGAAACAGAATTTATATAGATATTATCTAGTC TTTAGGAGCTGAGCTCTCTGTTCGGTTCAGAACACTGGCTGCTTCCTTCTTGTATAACAAGACATCTACTCCCTCTCTCTTTTGAA TTTCTTTCTTAATTA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884813 nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]	1410	1e-153
NP_566381 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	1391	2e-151
AAM64684 unknown [Arabidopsis thaliana]	1383	2e-150
NP_850556 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	1329	3e-144
NP_568149 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	993	3e-105

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9SG83 Putative uncharacterized protein At3g10770	1391	1e-151
Q8LBM0 Putative uncharacterized protein	1383	1e-150
Q3EB95 Putative uncharacterized protein At3g10770.2	1329	2e-144
Q93YN3 Putative uncharacterized protein At5g05100	993	2e-105
Q9FF64 Gb\|AAF19572.1	987	9e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT3G10770.1 nucleic acid binding	1392	5e-154
AT3G10770.2 nucleic acid binding	1330	8e-147
AT5G05100.1 nucleic acid binding	993	1e-107
AT2G40960.1 nucleic acid binding	676	6e-071
AT3G56680.1 nucleic acid binding	673	1e-070

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			30%


21	3			30%


19	3			30%


15	1			10%

Unigene Members	Member information