RadishBase

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Information for unigene UN25501

FASTA Sequence

Unigene ID: UN25501	Length: 807	SSR	SNP
GGAGTATATAGTTCACATCTCTCTTGTCACCTGAGGGCTTCAGGAGTTGGGAAAAGACCACCATTTATTATTCCTCTCTCTCTCTT TACACGAAGTGAGACGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAAAGGGAAAGAAGGAGAGCGGTTC GAGAAAAGGGCTTGAGTTAACGATGAGAGTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGCAAAACAGA CAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTCTTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTT GTGTTCAACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGTCATTCTGATGATCAGCAAAGAAAGAAGAAG CAAAGGCTTGATAATGGCGGTGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGAGCTGCTGGAGCAATAG GGTTGATGGGTGTACAAGGGAACAAACATGTGATGTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTGCT TCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTTGTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATA TCTTCCTTAATGCAATTGATATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTTGTGTAAAGTCATTATCAACAATCA TGTAATTGTCTATTTGCTTTTAGTGCTTTTCAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM67044 unknown [Arabidopsis thaliana]	791	3e-082
NP_567473 uncharacterized protein [Arabidopsis thaliana]	786	1e-081
NP_193297 uncharacterized protein [Arabidopsis thaliana]	785	2e-081
XP_002870225 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]	776	2e-080
XP_002870224 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]	745	7e-077

Swiss-Prot top hits (Blast detail)	Score	e value
Q8L8Z1 UPF0497 membrane protein At4g15630	786	6e-083
O23413 UPF0497 membrane protein At4g15620	785	7e-083
A7NW78 UPF0497 membrane protein 4	486	3e-048
B9RT04 UPF0497 membrane protein 12	463	2e-045
A7PTY8 UPF0497 membrane protein 6	420	2e-040

TrEMBL top hits (Blast detail)	Score	e value
B9HMP6 Predicted protein	469	5e-045
B9NJU7 Predicted protein	457	1e-043
B8A7Z5 Putative uncharacterized protein	310	1e-026
B9P6U2 Predicted protein	291	2e-024
A2YKT5 Putative uncharacterized protein	263	4e-021

Arabidopsis top hits (Blast detail)	Score	e value
AT4G15630.1 integral membrane family protein	787	4e-084
AT4G15620.1 integral membrane family protein	786	5e-084
AT4G20390.1 integral membrane family protein	231	1e-019
AT5G44550.1 integral membrane family protein	201	4e-016
AT2G35760.1 integral membrane family protein	179	1e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			20%


7	5			50%


11	3			30%

Unigene Members	Member information