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Information for unigene UN25507
| FASTA Sequence |
| Unigene ID: UN25507 | Length: 1419 |
SSR | | CTCTCTCTCTCTTCTCTTAGGGTTTCCATTCTCTCTCTCTCTCTCTCCATCGCATGGCCGGCGCCGGAATCCACCCTTACCACCAG
CAGTGGCCACCCACAGGAGCTCCGCCTCCTCCCGCCGCAGTATCATCAGCTCCTCCACCACATCCTCCGCCTGTACATCATCATCA
CCCTCCTCCCCCTGGTTTAGTCGACAACCATAATCGTCCTCCTTACGACGAGCTTCGGACAATCTTCATCGCTGGTCTTCCGGATG
ATGTGAAAGAGAGAGAGCTTCTGAATCTCTTAAGATGGTTACCAGGTTACGAGGCTTCGCAGGTGAACTTCAAGGGAGAGAAGCCC
ATGGGCTTTGCTCTTTTCTCCACTGCACAGTTTGCCTTGGCTGCCAGAGATGTCCTTCAGCATCTGGTGTTTGATGCGGAGTCAAA
GTCTGTGTTACATGCAGAGATGGCCAAGAAGAATCTCTTTGTTAAAAGAGGAATCGTTGGGGATTCAAATGCATATGATCAAAGTA
AGCGCCTAAGAACTGGTGGTGGTGACTGCACACACTCTGTTTATAGTCCGTCTCCCTTCCACCCTCCCCCACCTCCAGTTTGGGGT
CCACCTCATGGCCATGGGTATCTGTCAGCCGCAGCTCCACCATATGATCCCTATGCAGGTTACCATGCTCCCCCTGTACCAATGCC
TCCCTCCGCACCTATAGCAGCTCCTAGTTCTTATGTGCCCGTCCAGAATATTAAGGATAACCCTCCTTGCAATACCCTTTTTATTG
GTAATCTCGGGGAGAATATTAACGAAGAAGAACTGAGGAGTCTGTTGAGCGCGCAGCCTGGTTTCAAGCAAATGAAAATTCTGAGA
CAAGAAAGGCATACAGTTTGTTTTATTGAATTCGAGGATGTGAATAGTGCCACCAACGTTCACCATAACTTGCAAGGTGCTGTCAT
TCCAAGCTCTGGTTCAGTTGGCATGAGGATCCAATTTTCCAAGAATCCATATGGGAAAAGGAAGGACGGCGGAGGAGGCCACTCCT
TCTTTCCTTCACCAAGCACTAATGGTGCTCAAGGAGCCTTGACGTATCAGTAGACCACCGTGAAGGGGATGTTACTCTCTTCTCTA
TCTCCCTCCCAGGAATAGGATGCATCTTGCAGGCAGTCTGCATTTGCATCCATTTCATTCTCGACATTTTTAAGCATCAGCATTAC
TTCTTGTTCATGTGATGGTTGCATATAGTGTGACATCATCAACATATAAACATGTGTCACACCTATTAGCTTTGCTACATGCATTC
TCATGTGTGGTTTTTTAAATCTCTAGGAGTTGGGTTTGCCATTTGTTTCTCTTCTTGCTGCTTAAACGCCTTTGCTTCTTGTGATT
CATTTTCATCATATCGACCTCGACCAATGAAACTCCATTTAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885428 hypothetical protein ARALYDRAFT_479641 [Arabidopsis lyrata subsp. lyrata] | 1722 | 9e-190 |
| NP_683582 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1718 | 3e-189 |
| BAB01713 unnamed protein product [Arabidopsis thaliana] | 1573 | 2e-172 |
| XP_002525006 RNA-binding protein with multiple splicing, putative [Ricinus communis] | 1352 | 7e-147 |
| XP_002273578 PREDICTED: hypothetical protein [Vitis vinifera] | 1259 | 4e-136 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O74452 Cell wall integrity protein scw1 | 222 | 3e-017 |
| P34761 Protein WHI3 | 204 | 4e-015 |
| O59784 RNA-binding protein mde7 | 168 | 6e-011 |
| P45429 U1 small nuclear ribonucleoprotein A | 161 | 4e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ASW4 AT3G21215 protein | 1718 | 2e-189 |
| Q9LU37 Genomic DNA, chromosome 3, P1 clone: MXL8 | 1573 | 1e-172 |
| B9SG87 RNA-binding protein with multiple splicing, putative | 1352 | 5e-147 |
| B9HK68 Predicted protein (Fragment) | 1205 | 5e-130 |
| B9HVD8 Predicted protein (Fragment) | 1141 | 1e-122 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G21215.1 RNA-binding protein, putative | 1724 | 2e-192 |
| AT2G42240.1 nucleic acid binding / nucleotide binding | 221 | 4e-018 |
| AT2G42240.2 nucleic acid binding / nucleotide binding | 221 | 4e-018 |
| AT2G42240.3 nucleic acid binding / nucleotide binding | 221 | 4e-018 |
| AT3G13700.2 RNA-binding protein, putative | 175 | 8e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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