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Information for unigene UN25535

FASTA Sequence
Unigene ID: UN25535Length: 999 SSR 
GGGCCGTTTTATCTACTCGTTCCCCCACCTAGAATCCCTAACTCTCACACACATTCTCTTCATTGGGAATCTACTTCCTCTTCTTT
TTAGAAAACTCGAAGTGTATTATCTTCTTCATGAGTTGCTTCGTTCTTATCATCTATTGATGTCTACTATTTGAACGTAATGGGTT
TCGCTTCATTTCACAACCTTTTGAGTAAAGTCGATGGCTTTGGATGTGGGTTCTTCGTTTTTTGCAGTTTCTATCAGATTTTCAAT
CTCTTCTTTCTCTTTTGCTTGCTTGTTTTATCACTCAAGTTTCTTCTCTTCAAGGGTCCTTCATTGTTTGTTCAGTTCCTAGAGAA
GATATATCGAGTCTCCCCGAAGATTCAGTGTTGCAGTTCCTTCGATCAAGACAACGACGGAGACGGGTTCGGTTCAAAACCTTGTT
TGCTTGATGAGTTGGATCAGAAGAAACCTGTTGTTTTACATTGGAACCGAAAGAAGACGAACGAGAACTGCGAGGACTGTGATCAA
CTTATTCTAAGCGACGAACTTAATCTCAGAACGAACAACAGAGACAATGCGGAGACAGAGGAAAGCGAGGAGGAGGAGGAGGAGGA
ATCACGCGAAGACCAGGTGTTCGACGTTATTACTCTGAGAAAAATGGTGAAGAGAGAGAGGAAGCGCGGAGATGGTTTGAAGATGG
AGCTGGAGAAGGAGAGGAGGGCGGCGGAATCAGCAGCTGAAGAAGCCATGGCTATGCTTTTGAAGCTAAGGATGGATAAGAGCGCT
GTGGAGATGGAGGCGAATCAGTACAAGAGAGTCGCGGAACAGAAGCAGGTGTATGACCAAGAAGTGATTCAATCGTTGCAGTGGAT
GTTGACGAAGCCTGATAACGGAGATACGATTCAAGGCTAAAAAAGCTCTTTGTATTGCCTATAAATAAATAAACAAAAAGTAAAAG
ACATGTATTCGATTAACACAGCTTGTTACTGAAATGAATTTATCTTACGTGGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892992 hypothetical protein ARALYDRAFT_472042 [Arabidopsis lyrata subsp. lyrata]7493e-077
NP_973856 uncharacterized protein [Arabidopsis thaliana]4124e-038
AAF25991 F15H18.23 [Arabidopsis thaliana]4124e-038
ABW70156 DUF593-1 protein [Lotus japonicus]2961e-024
ABW70157 DUF593-2 protein [Lotus japonicus]2961e-024

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LM24 T10O22.234123e-038
Q9LPP7 F15H18.234123e-038
A8W457 DUF593-1 protein2968e-025
A8W458 DUF593-2 protein2968e-025
B0F6T0 DUF593-containing protein 22806e-023

Arabidopsis top hits (Blast detail)Scoree value
AT1G18265.1 unknown protein7142e-075
AT4G13160.1 unknown protein1882e-014
AT1G18990.1 unknown protein1792e-013
AT1G74830.1 unknown protein1702e-012
AT1G04890.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).1674e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
61  33%

Unigene MembersMember information