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Information for unigene UN25624
| FASTA Sequence |
| Unigene ID: UN25624 | Length: 950 |
| SNP | GGAACATCAACCAGAACCATCCAAGAATATTTCTCTGGTTTAGAATTTTTAAATTTATTTCACAACACAACCATGAAGAAGATCGA
CTTAGGGAACCACCGCGAGGTGGCTCAGCCGGACTGCATCAAAGCTCTCATTGTCGAATTCATCACCACCTTCTTCTTTGTTTTCG
CCGGCGTCGGATCCGCCATGGCCACCGACAGCTTAATCGGAAACACGTTAGTGGGACTTTTAGCGGTCGCGGTGGCTCATGCATTT
GTGGTGGCGGTAATGATATCTGCTGGACATATCTCTGGTGGCCACCTCAACCCCGCTGTTACCATCGGCCTACTTTTCGGAGGTCA
CATCAGCGTCTTCCGCGCGTTCCTCTACTGGATTGATCAGCTGTTGGCCTCCTCCGCAGCCTGCTTCCTCCTAAGTTACCTCACCG
GAGGAATGGGAACTCCGGTTCACACTTTGGCAAGTGGAATCAGTTACACTCAGGGGATCATATGGGAGATCATCTTGACATTCTCA
CTTCTCTTCACTGTCTACGCCACGATGGTGGATCCCAAGAAAGGCTCCCTTGATGGGCTAGGCCCACTTCTCACCGGATTTGTCGT
CGGAGCCAACATCCTTGCCGGTGGCGCCTTCTCTGGAGCCTCAATGAACCCGGCCAGATCCTTTGGACCTGCTTTGGTCTCTGGGA
ACTGGACTGACCATTGGGTATATTGGGTTGGACCGTTGATCGGTGGTGGACTTGCTGGATCATCTACGAGAACGTCCTCATTGACC
GTTCAGATGTCCCACTCGCCGACGACGAGCAACCATTCCTTAATTGAATGTTTGAATCAATCCTATGCACGTTACACCATCTATCA
AGCTCATCATTAATTGTGTATTATCTTTTTCTTGGTACATTTTCAAGATGTATCTCTTGTAATCTTAAATTTATCAAGTTCCAGTT
ATCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180152 aquaporin TIP4-1 [Arabidopsis thaliana] | 1113 | 2e-119 |
| XP_002878889 TIP4_1 [Arabidopsis lyrata subsp. lyrata] | 1096 | 2e-117 |
| XP_002309548 aquaporin, MIP family, TIP subfamily [Populus trichocarpa] | 1014 | 6e-108 |
| DAA33872.1 TPA_inf: aquaporin TIP4;1 [Gossypium hirsutum] | 991 | 3e-105 |
| XP_002516539 tonoplast intrinsic protein, putative [Ricinus communis] | 987 | 8e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O82316 Aquaporin TIP4-1 | 1113 | 9e-121 |
| P50156 Probable aquaporin TIP1-1 | 683 | 6e-071 |
| Q41963 Aquaporin TIP1-2 | 668 | 3e-069 |
| Q84RL6 Aquaporin TIP2-3 | 667 | 5e-069 |
| P25818 Aquaporin TIP1-1 | 666 | 6e-069 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9H902 Aquaporin, MIP family, TIP subfamily | 1014 | 4e-108 |
| B9RS20 Tonoplast intrinsic protein, putative | 987 | 5e-105 |
| C6TB36 Putative uncharacterized protein | 937 | 3e-099 |
| C6T8T3 Putative uncharacterized protein | 934 | 8e-099 |
| D3GDK8 Putative tonoplast intrinsic protein | 918 | 5e-097 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G25810.1 TIP4;1 (tonoplast intrinsic protein 4;1); water channel | 1113 | 8e-122 |
| AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel | 668 | 3e-070 |
| AT2G36830.1 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel | 666 | 5e-070 |
| AT3G16240.1 DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 655 | 1e-068 |
| AT4G17340.1 TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel | 643 | 2e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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