Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25645

FASTA Sequence
Unigene ID: UN25645Length: 798 SSR 
TTTCAGAGGAGATAGCATATCAGAACAGGATGATCCTCAAAACTTGAGTTGAACATATGATTAATGTGAGGAAAAATTTGGGGACT
ATAAGTGTTAAATTCTCACATTTTTATGATGAGGAGGAACCAACCAGATATGCTGGCTTTGTAAAAATCTTATCAGCGTAATTCGG
GTGACATTATGAAGTGGTAACAAGAGCAAGAGAGGATATGATTCTTATTTTGAGGTAGGAGTTGTCTTAAAGAGGACCAGGGAAAG
TTCCATTCTCTCTTTGCTCGTTCCACCTATCAACCCATTCGCCGGGGCAAAGAGAACGATAAAACTTTGAAAACTTGTCGCACTCT
GGAGCATCGTCGCCCTTGGCAGCTACACATCTGTGATATTCAATGTAACGTGTGAAACAATGCCTGGTTTGGTTAGTTGTCGGGAA
ACGGAAATCAGCAGGAGCTGTCTCAAGCTTGATCTCATCAGGAGTCTCCTCAGCAACTTCTTCAGTAGTGTTTTCTTCTTCAGTAG
CCGCAGCAGGAGCCTCTTCAGAAGTGACTTCCGTGGAAGCGGGAGACTCGGACTTGTCTTCAACAGCTTCCTCAGGAGGAGGAGAA
TCTTCCTTGGCTTCAACCTCTTCAGCTTGAACTTCAACAGGCTTCACTTCTTTCTCCAAATGATATTGCTCGGAGAGCGACGGAGT
TTGAGCAGAAACCGATTCCGCCATTTGAAGTGTGTGAACTCAGGAGAGCGACTGAGGATCTTTTGATGGTTCGGTAGGTTTAAGCT
CTCTCTCTCTCTCTCTCGGACTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_173661 cytochrome C oxidase 6B [Arabidopsis thaliana]5701e-056
AAM63485 cytochrome c oxidase subunit, putative [Arabidopsis thaliana]5673e-056
XP_002890515 hypothetical protein ARALYDRAFT_889753 [Arabidopsis lyrata subsp. lyrata]5503e-054
NP_001050275 Os03g0390400 [Oryza sativa Japonica Group]4965e-048
AAM92706 putative cytochrome c oxidase subunit [Triticum aestivum]4957e-048

Swiss-Prot top hits (Blast detail)Scoree value
O94581 Cytochrome c oxidase subunit 6B2722e-023
P14854 Cytochrome c oxidase subunit 6B12231e-017
Q5RCT0 Cytochrome c oxidase subunit 6B12212e-017
P00429 Cytochrome c oxidase subunit 6B12175e-017
Q7YRK6 Cytochrome c oxidase subunit 6B12175e-017

TrEMBL top hits (Blast detail)Scoree value
Q9S7L9 Putative cytochrome c oxidase subunit5709e-057
Q8LCP1 Cytochrome c oxidase subunit, putative5672e-056
Q9SXV0 Cytochrome c oxidase subunit 6b4964e-048
Q8L808 Putative cytochrome c oxidase subunit4955e-048
A9PHL0 Putative uncharacterized protein4911e-047

Arabidopsis top hits (Blast detail)Scoree value
AT1G22450.1 COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase5706e-059
AT5G57815.1 cytochrome c oxidase subunit 6b, putative3717e-036
AT4G28060.1 cytochrome c oxidase subunit 6b, putative3521e-033
AT1G32710.1 cytochrome c oxidase subunit VIb family1639e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  40%
 
83  60%

Unigene MembersMember information