Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25655

FASTA Sequence
Unigene ID: UN25655Length: 770 SSR 
GGACGTAGTACGATTCTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAACCTACGATCTTCTTCGTCAAGATTCGAGT
ATGAAAGGAGGTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGGCGAAGAAGCCAGCTAAAGCAGCAGGTCGTAGCAA
AGCGGCGGCTAAGGATCCTAACAAACCAAAGAGGCCTGCTAGTGCCTTCTTCGTTTTCATGGAGGACTTCCGTCAGACTTACAAGA
AGGATCACCCCAACAACAAATCTGTTGCTGCTGTTGGTAAAGCTGGTGGAGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAGGCT
CCCTTTGTAGCTAAGGCTGATAAGCGCAAGGTTGAGTATGAGAAGACCATGAAAGCCTACAACAAGAAGCTGGAGGAAGGCCCAAA
GGAGGACGAGGAGGAATCTGACAAGTCCGTGTCCGAGGTGAATGATGAGGATGATGCCGATGATGGTAGTGATGAGGAGGAAGACG
ATGACTAAAGAAGTTGAAGCTGGTAGCATAATAGGGGCGCTACAAGCCTACAAGGATCTCTGGGATGTTTTTTTCTTTTTTTTTTC
TTTCTTATTTACTGATGTTTCAAGTTAGTAAGCTTGCCACTATCTCTCACTGATTCTGATTCTACGTGTAATGGAAAAAGTGTGTA
GACTGTTTGAATGAGAGATTTGCAGGTCTATGTAACAATTTAGCTTTTCGTTCTAAAATATGTTATCATCCCTTTCTTCACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33706 unnamed protein product [Thellungiella halophila]6677e-068
NP_564123 high mobility group B2 protein [Arabidopsis thaliana]6443e-065
NP_001077569 high mobility group B2 protein [Arabidopsis thaliana]6354e-064
AAF80615 F2D10.18 [Arabidopsis thaliana]6328e-064
NP_001031074 high mobility group B2 protein [Arabidopsis thaliana]6264e-063

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein5132e-051
P40619 HMG1/2-like protein4659e-046
P40620 HMG1/2-like protein4461e-043
P27347 DNA-binding protein MNB1B4343e-042
P40621 HMG1/2-like protein3582e-033

TrEMBL top hits (Blast detail)Scoree value
O49596 HMG protein6442e-065
A8MQZ3 Uncharacterized protein At1g20693.36352e-064
Q9LM85 F2D10.186326e-064
Q2V4M2 Putative uncharacterized protein At1g20693.26263e-063
P93047 At1g20690/F2D10_156121e-061

Arabidopsis top hits (Blast detail)Scoree value
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor6512e-068
AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor6413e-067
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor6352e-066
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor6323e-066
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor6064e-063

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  80%
 
101  20%

Unigene MembersMember information