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Information for unigene UN25667

FASTA Sequence
Unigene ID: UN25667Length: 1007 SSR 
TTTTTTCTTCCCTAAAATATATCGTTTTCAGTTTATTTTGTTTTGTTGGGTGCAACTTCACCTCACAATTTTTTTGTATGAAGCAC
CTTTCTGATTCGTAGATATGAGTCGTCTAGTCATCTTGATTTGATTTGGTTATAGTCTAACATCGACCTTTGATTGAAATAAGAAC
AAAAGAAAGAATACATACATCCCCTTCATCTTGCACCAATTCCTTTATTTTCTAGGGTTTTATTTTTATTACATTAGTTTTTTTAT
ATTCTCTCTCTCCTCTCTCTCTCTCTCTCGAATTTTATTCATCTGGGTATGGAAGAATATCAACATGAAAGCAGATCCACTCCTCA
TAGAGTAAGTTTCTTGTACTCTCCAATCTCTTCTTCCCACAAAAATGATAACACCACAATCAACAGCAATAATACCAATTACGGTC
CTGGTTACAATAATACTCATAACAACAATCATCAACAACACATGTTATTCCCACATATGAGCTCTCTTCTTCCTCAAACGACGACT
GAGAATTGTTTCCGATCCGATCATGATCAGCCTCCCAACGCATCTGTTAAATCAGAAGCAAGCTCCTCAAGAATCAATCACTACTC
TATGTTGATGAAAGCAATCCACAATACTCAAGAAGATAACAACAACAACAACAATGATACGGAATCCATGAAAGCTAAGATAATCG
CTCATCCCCACTACCCCACCCTCCTACACGCCTACTTAGACTGCCAGAAGATTGGAGCACCACCTGAGGTAGTTGATAAAATTACG
GCGGCAAGGAAAGAGTTCGAGGCGAGGCAGCAGCGGCCAATAGCGTCCGTGACTGCGCTGTCTAGAGACCCTGAATTGGATCAATT
TATGGAAGCATACTGTGACATGCTGGTCAAATATCAAGAGGAGCTAACACGGCCCATTGAAGAAGCAATGGAGTATATACGACGTA
TTGAATCTCAAATTAGCATGTTGTGTCAGGGTCCCATTCACATCCTCACAATCCTGATGGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACS28249 BREVIPEDICELLUS [Brassica rapa]11015e-118
ACS28250 BREVIPEDICELLUS [Brassica oleracea]10953e-117
XP_002874518 hypothetical protein ARALYDRAFT_489727 [Arabidopsis lyrata subsp. lyrata]9762e-103
ABG66654 BREVIPEDICELLUS [Cardamine hirsuta]9734e-103
AEI17372 Knox-like protein 1 [Arabidopsis lyrata]9708e-103

Swiss-Prot top hits (Blast detail)Scoree value
P46639 Homeobox protein knotted-1-like 19695e-104
O04134 Homeobox protein knotted-1-like 13791e-035
O04135 Homeobox protein knotted-1-like 23682e-034
Q41330 Homeotic protein knotted-13664e-034
P46609 Homeobox protein knotted-1-like 63379e-031

TrEMBL top hits (Blast detail)Scoree value
C5MKB4 BREVIPEDICELLUS (Fragment)11014e-118
C5MKB5 BREVIPEDICELLUS (Fragment)10952e-117
Q0Q5B4 BREVIPEDICELLUS9733e-103
C5IX10 Brevipedicellus (Fragment)9697e-103
Q49RB7 Knotted-like homeobox protein4454e-042

Arabidopsis top hits (Blast detail)Scoree value
AT4G08150.1 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor9694e-105
AT1G62360.1 STM (SHOOT MERISTEMLESS); transcription factor2831e-025
AT1G23380.1 KNAT6; DNA binding / transcription activator/ transcription factor2822e-025
AT1G70510.1 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor2705e-024
AT1G23380.2 KNAT6; DNA binding / transcription activator/ transcription factor2696e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  50%
 
71  50%

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