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Information for unigene UN25768

FASTA Sequence
Unigene ID: UN25768Length: 1420 SSR 
GGGCCGCCTCTCTGTTTCTTTTCTTCCTTCACCCATTTGCTTCCTTCTTCGTCTCTGTGGTGAGCTGAGCTGAGCTGCTGTGGTAA
GAAGAAGATGAGTAACACATCGAAGAATAACCCAACGGTGGAGGAAGAAGAAGAAGAAGAAGACGAGGGGGACGTTTTCCTCGGTG
AATCCGATGTCCTCCATGAGTTCGATGTCGACGGTGAAGATCTTCCTGAAGCAGATGATAATGATGAAGAAGAAGAAGAAGAAGAG
TTTGATGAAAACGATGACTCTGTTCACACATTCACCGGTCACAAAGGTGAGCTTTATGCATTAGCTTGTAGCCCAACGGATCCTAC
CCTTGTAGCAACCGGAGGTGGAGATGATAAAGCCTTTCTCTTTAAGATTGGCAATGGAGATTGGGCTGCTGAGCTTCCTGGTCACA
AGGACTCTGTTTCCTCTCTAGCTTTTAGCTACGATGGACAGTTGCTTGCTTCTGGAGGTTTGGATGGTGTTGTTCAGATCTTTGAT
GCTTCCTCTGGGACTTTGAAATGTGTTTTAGACGGTCCTGGTGGTGGAATCGAGTGGGTGAAGTGGCATCCGAGAGGACACATTGT
GTTGGCTGGATCAGAAGATTGCTCTATGTGGATGTGGAATGCTGATAAAGAGGCTTATCTTAATATGTTTTCTGGTCATAACCAAA
GTGTTACTTGCGGTGACTTCACCCCTGATGGTAAACTGATTTGTACTGGCTCTGATGATGCTAGTTTGATTGTATGGAACCCAAAA
ACTTGTGAAAGCATTCATGTGGTTAAAGGTCATCCATATCATACGGAAGGGCTGATATGCTTGGACATCAACTCGAACTCCAGTCT
TGTTATCAGTGGCTCAAAAGACGGTTCTGTTCACATTGTCAACATAGTCACCGGAAAGGTTGTGAGCTCTCTGGCTTCCCATACAG
AGTCAGTTGAATGTGTGAAGTTTTCACCGAGCTCAGCAACAATCCCCATGGCTGCAACAGGAGGAATGGACAAGAAGCATATCATC
TGGGATCTGCAACATTCAACTCCCAGGTTCATCTGCGACCACGCGGAAGGTGTGACATGCGTGACTTGGATAGGAACTTCCAAGTA
CTTAGCCACTGGCTGTGCAGATGGTACGGTGAGAGTTTGGGACAGCTTATTAGGCAACTGCGTTCATACCTTCCATGGCCATCAAG
ATGCGGTTCAGGCTATCTCGGTCTCCACCAACACCGACTTTATTGTTTCGGTCTCTGTTGATAACACTGCTCGTGTCTTCGAGACA
TCTGAGTTCCTAAACAAGACGGCATAACACTTGTTATATGGTATTTTATTACCTCTCGTTGTGGGTTCGGATAAGTGATGAAAATC
ATTCTACTTTTCAATTTTCTATGCAATGCAATATCAATAGTGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_177329 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]19371e-214
XP_002887393 transducin family protein [Arabidopsis lyrata subsp. lyrata]18365e-203
AAF43237 Contains similarity to the vegetative incompatibility protein HET-E-1 from Podospora ansering gi|3023956; It contains 5 WD40 domains PF|00400 [Arabidopsis thaliana]17362e-191
XP_002326013 predicted protein [Populus trichocarpa]14728e-161
XP_002282186 PREDICTED: hypothetical protein [Vitis vinifera]14575e-159

Swiss-Prot top hits (Blast detail)Scoree value
Q00808 Vegetative incompatibility protein HET-E-14535e-044
Q8YRI1 Uncharacterized WD repeat-containing protein alr34664232e-040
O13982 Uncharacterized WD repeat-containing protein C25H1.08c3569e-033
Q8YV57 Uncharacterized WD repeat-containing protein all21243334e-030
O61585 Katanin p80 WD40-containing subunit B12922e-025

TrEMBL top hits (Blast detail)Scoree value
Q8RXQ4 Putative uncharacterized protein At1g7184019377e-215
Q9M9G2 F14O23.22 protein17361e-191
B9IQM6 Predicted protein14726e-161
B9MW44 Predicted protein (Fragment)14377e-157
A5AZU2 Putative uncharacterized protein14279e-156

Arabidopsis top hits (Blast detail)Scoree value
AT1G71840.1 transducin family protein / WD-40 repeat family protein19383e-217
AT4G02730.1 transducin family protein / WD-40 repeat family protein3154e-029
AT5G08390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink).2823e-025
AT5G23430.1 transducin family protein / WD-40 repeat family protein2733e-024
AT5G23430.2 transducin family protein / WD-40 repeat family protein2733e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  60%
 
92  40%

Unigene MembersMember information