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Information for unigene UN25779

FASTA Sequence
Unigene ID: UN25779Length: 1592 SSR 
GGGGAGCTTCTTCTTCTTCAATACAAAGTCAGGCAAAAGTCAGAGAGAGACTGTAGAGTGACGTCGTCGCGATTCTAGAGTTTCTT
CCATCCACGATCAAACTTTTCTCTCTCTCTCTCTCATTTTTTTCTCGGTCAGAGGAATAGAAGAAGATAAAAAAGGATACATGGCT
GGATGATAAGAGCCTCATCTCCGGAGGAGTTTCGGAGTTTTTTTCCTTTTTAAAAAAGGATGGCAGTCTCTTTCCCTCGTCTTCCG
AGGTGGTTGTGTGGTGGTAACTCTAAAGAGAGAGATAAGAAAGAGTCCAGAGGATCCTCCTCTTCACTCAAGAAGAATATTTATAA
TAACAAGACTGGATCTTCTTCTTCTTCTTCTACGGTGAAGAAGATTAAGAGAGGATGGATTGGAAGAGGAGGAGGAGAGGAGGAGA
AGATTGGGAACGTTGTGTTTCCCCAACCGGATGATCCTGAGTGGTCTGTTGGCTGGGTCGAGCCACATGGACCAGGGTTTAAATGT
GAGGATGATACTGGTGGTGGGTTTGTGGTTCTTGTTCCTTGTTACAAGAAATTAATTGATGGTTCAGGGAATCATATTCCAAGCGG
CGGCTTCTTCTCTCCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTGTAATAAACTGGAGGATTGG
CAAGATCAAGACTGTTTCTCATGTTATTTTCAGTTTCAAAATAAAGAATCGAATAATCCAAAAAAAAAAAAGAGGCAATGATTCGT
GGATAGCTTGTGGAGAAGTCTTGTGATTTTCTGTTGCAAGTGAGTGACACCAAAATTATCAGGTCATCTCTCAAGAATCTACTAAT
GGACAAAGGCGATGCTGATGGAGACTTGCCAACATAAAAAGATTGAATGAAGAATGATGAATTGGTAATGATATAAAATATGATTC
GGGTATTGGATATTTTTAATGTGGGCTGATTCAAGTGAAAGCGTTTTCTGCTTCTGTGGTCGAGATTATTGGCCTTGGAAATAAAT
GTTTTTTCTGTGGTATGTGTAATAGTAGCGTATATGTACATAAGGTTCTGTTTAATTGTTTCTTTCTTCAATCACATGCCATGTAT
GCTTCCTTCCAACAACACAAGATCCCCAGCGTTGTACACGTTATATGTAGTCAGAAACATTGATCTCAGAAAAGACTAAACCAAAG
TAAATTCAAGCATGTTGCATACGCTTTTGTTCAGATATGAAAGTTTTTCCACTAGTCGTCTTTGGAGTCCTTTGGAAGTTGCAAAC
CCATGAGGCCGAGTAAATTGGAAGCAGGACCAGGAAGACCTTGTTGTGAAGAGTAGGATTCAAGCAGGTTCTTAACCAGGTTGAAA
TCTGCATCAATTGGCGTAAATTCATCATCATCATTATCTTCCTTCTCTTTTGAAGTCTTTGACGATTCCCCGTTTTGCTTAGAAGA
AGGTTGATTCACATGTTCAAAGCTCTTTTCAAGAGTTGAGTTCTTAAGCTCCTCATTCATTGCTCCAGAGTAGGACTCCATAAAGG
CTTCCTTCTCATCATCATCGTTAGGATCTTCTCCTTCGCTCCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864959 hypothetical protein ARALYDRAFT_919881 [Arabidopsis lyrata subsp. lyrata]5874e-058
NP_201351 uncharacterized protein [Arabidopsis thaliana]5803e-057
XP_002866674 hypothetical protein ARALYDRAFT_496782 [Arabidopsis lyrata subsp. lyrata]4217e-039
NP_201352 uncharacterized protein [Arabidopsis thaliana]4154e-038
AAL87313 unknown protein [Arabidopsis thaliana]4154e-038

Swiss-Prot top hits (Blast detail)Scoree value
Q9LSM5 Protein SGT1 homolog At5g654904152e-039
O95905 Protein SGT11938e-014
Q9CS74 Protein SGT1 homolog1679e-011
Q54JR9 Protein sgt11382e-007

TrEMBL top hits (Blast detail)Scoree value
Q9LSM6 AT5g65480/K19O4_15802e-057
B9MT59 Predicted protein2971e-024
B9NGH1 Predicted protein2916e-024
B9T6T9 SGT1 protein, putative2891e-023
Q2LC23 SGT1 protein-like2801e-022

Arabidopsis top hits (Blast detail)Scoree value
AT5G65480.1 unknown protein5817e-060
AT5G65490.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 4480 Blast hits to 3390 proteins in 346 species: Archae - 8; Bacteria - 210; Metazoa - 1070; Fungi - 582; Plants - 124; Viruses - 61; Other Eukaryotes - 2425 (source: NCBI BLink).4151e-040
AT4G38060.2 unknown protein2081e-016
AT4G38060.1 unknown protein1661e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  67%
 
91  17%
 
101  17%

Unigene MembersMember information