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Information for unigene UN25881
| FASTA Sequence |
| Unigene ID: UN25881 | Length: 908 |
SSR | | GCAAACTCTTGTCTTTGATAAATAAAATAGAGAACAACCAACGTGAATACAAACATGAAGATAGACGTTCTCCGACGTGCCTTATT
CCAAAGTTTTAAATAATACAAAAAAAAATAAATAAACAGGGATCCAAAAAGTGGTTCTCAGTTCTTTCACACATGTTTTTTTCTTC
TGGACATGAAAGTATCCATATAACAATGAAGATATGCAAGAAGCCATGTTCTTTCATGATATATATATATATCACAACAGTTTCAG
ACCGGTTATTATCTATTTGGTCGGCCATGTTGCTTGTGCGGACATAATGATCCCCACAATAACTCCAAATAACCCCAGAGCGCTTC
CGAAGATCTCAATCACAAGAATCTTCACAAAGAGTGTGGAGTTTTGAGCATCAGATAATGCGCAACTGCTTCCAATGATTCCTACA
CATAACCCGCATACAAGGTTGGCGAATCCAACAATGATTCCGGATGCGAAGATTGCATATCCAGCTCGAAGAGACTCAGCGTCATA
CATCTTTGAAGAAGGAACACTCTCCAACTTCGTTTGAAGGATGATGGCAACAATAACGTCATATATAGCAACAGCTTCACAAAAGA
TAACACTGATGAGATTTTTGGAAGTGATACGAGGAGCTTCAATGGCCGCACCGATCAAACTACTTCCCGTTATGTAAATTCCCCAG
GCGGCACCGAGGACTGAGACGCCGATCGAGATGGCGATTTCGATTGCGGAGAAAGTGTACGGCGAGATCCTTACCAACGCCGCGCC
CCACGAGCTCGCATCAACCATTCCGGACATTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCCTCTCGTATTGCAAGGGT
CGTGATGAGAAGATCTGCTTCTCTCTCTCTCTCTCTTTAGGACGGGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180132 V-type H+-transporting ATPase 21kDa proteolipid subunit [Arabidopsis thaliana] | 828 | 2e-086 |
| XP_002880688 H+-transporting two-sector ATPase [Arabidopsis lyrata subsp. lyrata] | 828 | 2e-086 |
| NP_194979 ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] | 827 | 3e-086 |
| AAR26002 V-ATPase subunit c'' proteolipid [Xerophyta viscosa] | 774 | 4e-080 |
| NP_001152133 LOC100285771 [Zea mays] | 772 | 6e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P23968 V-type proton ATPase subunit c'' | 496 | 3e-049 |
| O14046 Probable V-type proton ATPase 20 kDa proteolipid subunit | 468 | 5e-046 |
| Q2TA24 V-type proton ATPase 21 kDa proteolipid subunit | 467 | 7e-046 |
| Q99437 V-type proton ATPase 21 kDa proteolipid subunit | 467 | 7e-046 |
| Q91V37 V-type proton ATPase 21 kDa proteolipid subunit | 467 | 7e-046 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SLA2 At2g25610 | 828 | 1e-086 |
| Q9SZY7 H+-transporting ATPase-like protein | 827 | 2e-086 |
| Q6S9B3 V-ATPase subunit c'' proteolipid | 774 | 3e-080 |
| B4FZS8 Putative uncharacterized protein | 772 | 4e-080 |
| C6T3I8 Putative uncharacterized protein | 768 | 1e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G25610.1 H+-transporting two-sector ATPase, C subunit family protein | 829 | 6e-089 |
| AT4G32530.1 vacuolar ATP synthase, putative / V-ATPase, putative | 828 | 8e-089 |
| AT4G32530.2 vacuolar ATP synthase, putative / V-ATPase, putative | 560 | 1e-057 |
| AT1G75630.1 AVA-P4; ATPase | 234 | 6e-020 |
| AT1G19910.1 AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism | 234 | 6e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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