RadishBase

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Information for unigene UN25889

FASTA Sequence

Unigene ID: UN25889	Length: 778	SSR
GGAGAAGGACTGATCCTTAGTACACGTGTCCTCTCGTTTTGTCCTCCGCGTCCTCTCTCTCAGATCACAAGATCCTGCATCCTCCG ACACCATTGTGTTTCGTTTCGTTCCTCGCCTTCTAGCCTTCGGCCTCATCACCGACTTCCTCTGGGCTATTGCTTTTGTCTTGTAC CTCTTTAAAGAACCTCACTCACTCTCTCTTTCTCTCTGTTACCAAAAATCCCCAAATCTTGAAAAGTTTTAGCCTTTTAGGGTTTG AAGACTGAGAGAGAGAGATGAGTGCTTCAAGGTTTATCAAGTGTGTAACAGTCGGCGACGGCGCTGTTGGAAAGACTTGTCTGCTC ATCTCCTACACTAGCAACACTTTCCCCACGGCCAGCTTCTTTAAAAAGGCTTCTCCTTTTCTCTGTTTTTCCTTCTTCTGGGTTTC TAAACACAAGAGAGGGATACGAAATGGTCCTAAGGCTCTTAAGCTTGTTCCTGTCATCATCCGCTGCAGGAGTTGCGGGAGAGTTA AGCTGCCACATTTCTTCTGTTGCAGTGGTGAGCGGGGAAACCCTAGTGAGCAAGGCAATTAGAATAAAGTCGAGTGATACTTTAGA CATAGTTGACTCTGTTTTGTCAGATTATTTGTTTTTTTTTCCCTGCAAGATCACCACACTCATGGTTCTCTTGACAAGTTATATTA TTGTCAATGCTTGTTGCAGAGTCTTGGCCAGCTCATTTATATATTGTGTGCCCTTAGACTCAAAACGAACAGCTACTTCTACAAAA GAGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002522475 conserved hypothetical protein [Ricinus communis]	241	2e-018
XP_002890644 hypothetical protein ARALYDRAFT_472732 [Arabidopsis lyrata subsp. lyrata]	241	2e-018
NP_564259 ribosomal L.2-like protein [Arabidopsis thaliana]	238	4e-018
AAM60988 unknown [Arabidopsis thaliana]	238	4e-018
XP_002888721 predicted protein [Arabidopsis lyrata subsp. lyrata]	237	5e-018

Swiss-Prot top hits (Blast detail)	Score	e value
Q38902 Rac-like GTP-binding protein ARAC1	171	1e-011
Q39435 Rac-like GTP-binding protein RHO1	171	1e-011
O04369 Rac-like GTP-binding protein RAC1	171	1e-011
Q38912 Rac-like GTP-binding protein ARAC3	171	1e-011
Q9SBJ6 Rac-like GTP-binding protein ARAC6	171	1e-011

TrEMBL top hits (Blast detail)	Score	e value
B9S906 Putative uncharacterized protein	241	1e-018
Q8LG83 Putative uncharacterized protein	238	3e-018
Q944L5 At1g26740/T24P13_11	238	3e-018
Q5Q0D8 Putative uncharacterized protein	234	8e-018
B4FS67 Putative uncharacterized protein	233	1e-017

Arabidopsis top hits (Blast detail)	Score	e value
AT1G26740.1 structural constituent of ribosome	238	2e-020
AT1G69485.1 structural constituent of ribosome	234	5e-020
AT2G17800.1 ARAC1; GTP binding	171	1e-012
AT2G17800.2 ARAC1; GTP binding	171	1e-012
AT4G35950.1 ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding	171	1e-012

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	4			80%


11	1			20%

Unigene Members	Member information