Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN25919

FASTA Sequence
Unigene ID: UN25919Length: 1717 SSR 
GCAGAGATTCACCTTCTCCTCTCTTCTCCTTTTATCTTTCCCTCTCAGACACACAGGAGATTCGAACACAACAAAAGAAAGAAAGA
GAAAGAGAAAGAAAAAAAGTCAAACGAAACGATGGCGTTTCATCAGAATCATCATCTCTCTCAAGACCTCTCTTTCAATCACTTCA
CCGACCAACACCAACCCCCTCCTCCTCAACCTCCTCCGCAACAACAACAACATTTCCACGACGCGACGCCGCCTCCTAACTGGCTC
AACACGGCTCTTCTCCGCTCCGACAACAACAACAACAACAACAACTTCCTCAACCTCCACACGACCACCGCCAACAACGCAACCGC
AGCGAGCAGCTCCGATTCTCCTTCCTCCGCCGCCGCCATCGCCGCTAATCAGTGGCTCTCCCGCTCCTCCTCCTTCCTCCAACGAA
CCGGAAACAACAACAACAACAACGCCGTCGTCGGAGACGTCATCGACGACGTAACCGGAGGAGGAGGAGGAGCCGAGCAGATGATG
AGCGGCGGCGAGAACAAGAACGACGGAGGAGGAGATGGAGTCGTGAGCTGGCAGAATGCGAGGCACAAGGCGGAGATCCTCTCTCA
TCCGCTGTACGAGCAGCTTCTGTCGGCGCACGTCGCGTGTCTGAGAATCGCTACCCCGGTCGATCAGCTTCCCAGGATCGACGCTC
AGCTTGCGCAGTCGCAGCACGTCATCGCCAAGTACTCGACTCTAGGAGCCGGCGGGCAAGGACTCGTCGGCGACGACAAAGAGCTT
GACCAGTTCATGACGCATTATGTTCTGCTTCTGTGTTCTTTCAAAGAGCAACTTCAACAGCACGTGCGTGTTCATGCGATGGAAGC
TGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACCGGAGTGTCTCCTGGTGAAGGAATGGGAGCAACAATGTCGG
ACGATGAAGATGAACAAGTAGAGAGCGATGCTAATATGTTCGATGGAGGAGGCTTAGATGTTTTGGGTTTTGGTCCTTTGATTCCT
ACTGAGAGCGAGAGATCTTTGATGGAACGTGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTTACAAGGAGAAGATAGTAGA
CATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGGAAGCTACCAGGAGACACAACCTCTGTTCTCAAAGCATGGTGGCAATCTC
ATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTAAAGCAGATAAACAATTGG
TTCATCAATCAGAGAAAGAGGAACTGGCACAGCAATCCCTCTTCTTCCACTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGA
CGATAGCGGAAGAGAGCGTTTCACGTAGGAAACAACATATATATTATTATGAAGTGAATTGTAGCTGGATTGGTTGGGATTTGAAG
CAAAGGGTTTTTAGGGGTTAAATTGAAGGAGAAGAAGTTGGGGCTTATATAGAAGAAGAGAGGGGACAGTATTAGAAAAGTAACTT
TTTGTGCAATTACATCATAGTACGCAGTTTGATTATGTTATGCCATATGTTTATTACTAGTAAGTACACAAATCCCAAAAGTAAAA
AAGGTTGTCACTGTCATCTGATTTCCATTCAAGTTTTGTTTGATTTGTTCCACACTATTATATGACTAGTCTAGTGTACTCGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197904 homeobox protein knotted-1-like 3 [Arabidopsis thaliana]19594e-217
AAM63298 KNAT3 homeodomain protein [Arabidopsis thaliana]19522e-216
BAJ34052 unnamed protein product [Thellungiella halophila]19452e-215
XP_002872145 hypothetical protein ARALYDRAFT_489374 [Arabidopsis lyrata subsp. lyrata]19182e-212
NP_001031938 homeobox protein knotted-1-like 3 [Arabidopsis thaliana]19012e-210

Swiss-Prot top hits (Blast detail)Scoree value
P48000 Homeobox protein knotted-1-like 319592e-218
O04136 Homeobox protein knotted-1-like 314672e-161
P48001 Homeobox protein knotted-1-like 413292e-145
O22300 Homeobox protein knotted-1-like LET1212602e-137
Q0J6N4 Homeobox protein knotted-1-like 1312037e-131

TrEMBL top hits (Blast detail)Scoree value
Q2V347 Putative uncharacterized protein At5g25220.219011e-210
A6XHG4 Class II knotted-like homeobox protein14711e-160
B9IL21 Predicted protein14351e-156
B1P380 Class 1 knox protein13463e-146
B6VG75 KNAT3-like transcription factor13275e-144

Arabidopsis top hits (Blast detail)Scoree value
AT5G25220.1 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor19601e-219
AT5G25220.2 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor19017e-213
AT5G11060.1 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor13291e-146
AT4G32040.1 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription activator/ transcription factor10791e-117
AT1G62990.1 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding / transcription activator/ transcription factor9733e-105

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
213  38%
 
181  13%
 
94  50%

Unigene MembersMember information