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Information for unigene UN25938

FASTA Sequence
Unigene ID: UN25938Length: 942 SSR 
GTTACGGCCGGGGGACACTCACAACACATAGAGAGAGAGAGAAAGAAACCTTTTTGCCTTTCACATTCACTCATCTCTCTAAGATC
ACTTTACTCTGATTTAGGGTTTCTCTCATAAACAGACACTCCGCCATGAACATTTTCAGGAAGAAGACTACTCCCAAAGATGCTCT
TCGCACCAGTAAGAGAGAAATGTCTGTGGCTACAAGAGGTATCGAACGAGAGATTTCATCTCTTCAGATGGAGGAGAAGAGACTAG
TTGCTGAGATCAAGAAAACTGCCAAAACTGGAAACGAGGCGGCGACAAAGATTTTAGCACGTCAACTTGTTAGATTGAGGCAACAG
ATTACAAATTTACAGGGAAGCCGTGCTCAGATCAGAGGTGTAACCACTCACACACAGGCTCTGTATGCGAGCACTTCGATTTCTTC
TGGTATGAAAGGTGCAACCAAAGCTATGGTTGCTATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTGATTAAGGACTTCC
AGAAACAGTCTGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCGGAAGAA
GAAACAGAAGACCTCACTAACCAAGTTCTTGATGAGATTGGTGTTGGAGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGCAT
CGCTACAAAGACTGCAGCTCCTCCTGCTACCACTGCCAACAGCAACAGCAACAGCTCTGAATCAAGTGAAGTGGATGAGCTTGAAA
AGAGGTTGGCTTCACTGCGAAGAATCTGAGAGTCAGCTTTTATGCATGCTTCTGTATGATTAAATAAAAAAAATAACAGCTTCCCT
TTTTTTTTCTTTTGCTTGTTGTGTGATCTGATCTCTGTATAAATCTGCTGAGACTTATTATGGAGGAAGCTTAATTTGACCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002862972 predicted protein [Arabidopsis lyrata subsp. lyrata]10325e-110
NP_199269 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]10201e-108
BAE99414 hypothetical protein [Arabidopsis thaliana]10154e-108
AAO64783 At5g44560 [Arabidopsis thaliana]9473e-100
NP_001119371 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]9223e-097

Swiss-Prot top hits (Blast detail)Scoree value
Q0WTY4 Vacuolar protein sorting-associated protein 2 homolog 210242e-110
Q941D5 Vacuolar protein sorting-associated protein 2 homolog 37132e-074
Q9SKI2 Vacuolar protein sorting-associated protein 2 homolog 14417e-043
Q54DB1 Charged multivesicular body protein 2a homolog 23825e-036
Q6NXD2 Charged multivesicular body protein 2b3781e-035

TrEMBL top hits (Blast detail)Scoree value
B9GIE6 Predicted protein8721e-091
B8AN41 Putative uncharacterized protein8622e-090
Q6ASS4 Os03g0639800 protein8622e-090
B7FHD8 Putative uncharacterized protein8612e-090
B9SV62 Charged multivesicular body protein 2b-B, putative8594e-090

Arabidopsis top hits (Blast detail)Scoree value
AT5G44560.1 VPS2.210251e-111
AT5G44560.2 VPS2.29273e-100
AT1G03950.1 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)7445e-079
AT2G06530.1 VPS2.14425e-044
AT5G22950.1 VPS24.12598e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  67%
 
62  33%

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