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Information for unigene UN25978
| FASTA Sequence |
| Unigene ID: UN25978 | Length: 1213 |
SSR | | GGGTGAAAAGACTTAAATTAGACTGTTAAACAGAGAAGCATTCATTATGAAGAGACCACAAAATAGAGAGAAACCCGAATCAAACC
AGAGCTAAGTAGTCAATGGCAGCACACAGACAGACGAGAACATGTTTTTCAATCGTAACCTTTACTTAATATGTTACTAATAAAAA
GACCACTCGTGCATCCATTGCATGACAAACATAGGTGAAGAGCTTCGTACGGTCCAAAACAGCCATCCTCTCACATAACTCTATAT
TCTTCGAAGCGCCCTCCAGAAAATGCGTTTAATGAGATTAGGAAGGGTGGTGATCAAAACTGGCGCCTTGGAGGCCTAGCCTCAGC
TTCAGAGACTCTTATTTGTCTACCGTCCAAATCGGCACCATTCAAGTTTCTGATGGCATTTTGGACCTCTTGAGCAGAGTTGTATG
TCACAAACCCAAAACCCTTAGATCGACCACTGTCCCTGTCGTAAATGACTCTAGCCTCAGCCACCTTTCCCTGCTCTCCGAACAAA
CTCTCGAGAGCCATGTCATCCACTCCCCAAGATAGGTTGCCGACGTAAACACGGTTTCCTGAACCAGAACCACCACCACCACCACC
ATATCCAGAACCGGAGCTTCCAAAGCTGCTTCTGGGTCCTCTGGAGAAGGAGTCTTCCCTCTTCGGTGGAGGAGGACCCGCATTAA
CTCTCAAGGCTCTACCATCCAACTCATAGCCATTAAACTGTTGGGCAGCTGCCTCAACTTCAGAGACTGAAGACATAGTCACGAAC
CCAAAACCCCTGCTTCGTCCTGTCACTTTGTCATAGATTACCTCAACCATCTCGACATTTCCGGCGCTCTCGAAGAGCTGAGCGAG
CTGAGCACTGTCGACGTCGAAGGGGAGGTTACCGACGAAGAGTTTGAGGTCAGCAGAGAAGGATTGCTCCTGCTGCGAAGGAGAGT
CATCGGAGAAAACTCCGTCTTCTTCTTCTACGCTGAAGTCATCTGTGACGGCAACATTACGGACGAAGCGAGACGCGGCGGAGACG
GAGAGGGAAATGGATTGGTGGTTGAGTTTGAAGGAGAGGGAAGGAGGGAGGAAGGGAATGGAGGCGGGTTTGGAGATGGAGAAAGG
AAGGGATTTAGGGTTGAAGGTGGAGAGAGCGAGGGACGACGCTGAAGCAGCCATGGAGGAAGCAGGAGAGGAGATAGAGATAGGGT
TGAGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 1236 | 2e-133 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 1217 | 2e-131 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 1213 | 7e-131 |
| XP_002281642 PREDICTED: hypothetical protein [Vitis vinifera] | 870 | 4e-091 |
| XP_002519525 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 846 | 3e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 1213 | 3e-132 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 815 | 4e-086 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 773 | 3e-081 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 759 | 1e-079 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 745 | 6e-078 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 1217 | 2e-131 |
| Q7GA50 Putative RNA-binding protein | 1213 | 5e-131 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 866 | 9e-091 |
| Q8W214 Single-stranded DNA binding protein | 831 | 1e-086 |
| B9MTC6 Predicted protein | 814 | 9e-085 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 1214 | 2e-133 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 560 | 1e-057 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 560 | 1e-057 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 272 | 4e-024 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 260 | 9e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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