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Information for unigene UN26000

FASTA Sequence
Unigene ID: UN26000Length: 997 SSR 
GGACGTGACGAGAACGCATCCATCATCACCTCTCATTTTTACGTCTCCTCTTCACTCTTTTTAGTCTATAACTATCACTCAGCGTA
ATCTCCACAAACTCTTCCTTTTTATTTCTCTTTGATCTAATCCCAAAAAACTCGTTGATCATAACATGCCGGGAAGTTATCACCGC
CGGGGATCCGACGTGTCAGTCATCATTTTGATGATCGCGTTACTGACGTGTCCAGTAATCATCAACGCTTCATCATCATCATCATC
ATCGGTAGCCAACACGAGGAAGCTCGACGAGGTAGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAACCCTCCTCCGCCGTCTC
CTCCACCACCATCTCCACCGCCTCCGGCATGTCCTCCTCCGCCGGCTCTCCCTCCACCGCCTAAGAAAGTTTCACCCAACTGTCCA
CCGCCTCCCCCGGCTAATTTCTTGTACATAACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATTCGGAGCGGCCGCCGG
AAAAAGCTTTACGGTGTTGAAGCTGTCCGGTCTAATCGGGTTTGGACTTATGGGGTTGTTGTTTCTTTGAAGCATGAACGGATCAA
AAGAAAAAGTTGAAGATTTGGTGGTATGTTGGAATACTTTTTAATTAGTTTTTTTTTAAGAGATCGAAAAACGTTATTGATCGTTG
GTTGATAAATAATCTATCTATCTAGGATTATATATGTTTCAACATATTTTCCTATATCCAAAATTTCTAATGGGGTTTTTAAACCA
AATAAATACGGTGCGAATATGTAAATTCTAGAATGTTATCTCTCTAAGTGATATGTTCTTCTCTTTGTCAACTTGGCGTTCCAATT
GATTCTTGGAATTGGAAAATTGTACTTTATGGAGAATATTTTTATGAGAAAGCAAATTCTACTTATAAAAGTTAAGAGATGTAAAG
TTGAATTTATCCGTAAATGTAAACTGAAAAGGTTAAAAGGCAAAATTGGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564187 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]6445e-065
AAM65061 unknown [Arabidopsis thaliana]6383e-064
XP_002890552 hypothetical protein ARALYDRAFT_472554 [Arabidopsis lyrata subsp. lyrata]6194e-062
AAD55511 Unknown protein [Arabidopsis thaliana]3856e-035
NP_565007 proline-rich family protein [Arabidopsis thaliana]3856e-035

Swiss-Prot top hits (Blast detail)Scoree value
Q9LUI1 Leucine-rich repeat extensin-like protein 61882e-013
Q9T0K5 Leucine-rich repeat extensin-like protein 31666e-011
P21260 Uncharacterized proline-rich protein (Fragment)1641e-010
P12978 Epstein-Barr nuclear antigen 21631e-010
P21997 Sulfated surface glycoprotein 1851551e-009

TrEMBL top hits (Blast detail)Scoree value
O23120 At1g230406444e-065
Q8LAZ0 Putative uncharacterized protein6382e-064
A0JQ68 At1g709903854e-035
Q9SSK0 F15H11.18 protein3854e-035
B9SJ44 Nutrient reservoir, putative2708e-022

Arabidopsis top hits (Blast detail)Scoree value
AT1G23040.1 hydroxyproline-rich glycoprotein family protein6452e-067
AT1G70990.1 proline-rich family protein4239e-042
AT1G02405.1 proline-rich family protein2411e-020
AT3G22800.1 leucine-rich repeat family protein / extensin family protein1882e-014
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1665e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  29%
 
102  29%
 
93  43%

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