RadishBase

| | | |

Information for unigene UN26136

FASTA Sequence

Unigene ID: UN26136	Length: 928	SSR
GGAAATTTCTCTCGGTCTTTCTTCGATCGGAGGGTGGACTTACCGACTCTGTCATTCCGTCGGAGATTGATAATAATTCGCCATGG GCAGATCACAATTGCTGTTGATAGGTTTACCGATTTTCTTGTTCTGTTCGGATCTCTTCAACCTTTTCACTCCTCCGCCTCCCAAA CCTCCGAGTCACCGTCCCAATCATCCACCGCACATCCCTCACCAGCAGCCTCCGCCTGTTGTCGTTCCTGATTTTCCTTCACAGAA GCAGGCAAGTGGCTTAGGAGGAGCAGTTGGATATGGAAACACTGTGGAGATCAACTTCTGCGTCTCCTGTTCTTTCAAGGGAACTG CAGTGAATATGAAGAAGATGTTAGAGACGGCTTTTCCCGGTTTAGATGTGGTTCTTGCGAACTACCCACCACCACCACCAAAGCGT CTTCTAGCTAAGGTTGTCCCCGTTGCTCAGATGGGAGTTATTGGGATGATAGTTGCGGGTGATCGTGTCTTTCCCATGATTGGTAT TGCGCATCCACCCGCATGGTTCAACTCCTTGAGGGCCAATAGGTTTGGATCCATGGCTTCCACTTGGCTTATCGGTAACTTTCTCC AGTCTTACCTTCAAAGCTCAGGCGCCTTTGAAGTTCTCTGCAACGGGGAACTGGTGTTCTCTAAGTTGAAAGAGGGTAGATTCCCG GGAGAGATCGAGCTGAGAGATCTCATCAGTAAAACTTTGACAAAACCTAGCATGGTTGCAGGTAGCTTACTGAAGTAGTTTCATCA GAAGAAGATGGGTGTTTCGATCTCTTGTGCCGAAAAAAAGCAAACGTTGTGTTTTTAGTTAACATCATGCTTTGAACATTCCTGGT TTGTCTGATGATGATGATGTAGCAGTCATACTTTGGTTTAGTTTAAAACTATACGCTTTGATTCAGGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_200672 Selenoprotein, Rdx type [Arabidopsis thaliana]	1014	6e-108
XP_002864584 hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata]	1011	1e-107
NP_001032096 Selenoprotein, Rdx type [Arabidopsis thaliana]	1008	3e-107
CAN83419 hypothetical protein VITISV_024323 [Vitis vinifera]	776	2e-080
XP_002264265 PREDICTED: hypothetical protein [Vitis vinifera]	744	1e-076

Swiss-Prot top hits (Blast detail)	Score	e value
Q9STZ2 SelT-like protein	732	1e-076
Q9BN19 Putative esophageal gland cell secretory protein 6	221	2e-017
Q19892 Putative selT-like protein F28H7.4	195	2e-014
Q9VMV6 SelT-like protein	189	1e-013
Q9U3N5 Putative selT-like protein C35C5.3	181	1e-012

TrEMBL top hits (Blast detail)	Score	e value
Q8W1E5 AT5g58640/mzn1_90	1014	4e-108
A5BN73 Putative uncharacterized protein	776	2e-080
A9P9D4 Predicted protein	728	6e-075
B9IGA7 Predicted protein	726	1e-074
A9PGA5 Putative uncharacterized protein	716	1e-073

Arabidopsis top hits (Blast detail)	Score	e value
AT5G58640.1 selenoprotein-related	1014	2e-110
AT5G58640.2 selenoprotein-related	1008	1e-109
AT3G47300.1 SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding	732	1e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	4			29%


12	4			29%


10	5			36%


8	1			7%

Unigene Members	Member information