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Information for unigene UN26138
| FASTA Sequence |
| Unigene ID: UN26138 | Length: 863 |
SSR | | GGGAGAAAAAAAGGGAACCCTAGATTTCTTCGATCGTGTCAACAACAGAGACGACGACGACGCGCAGAAAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAAAGGAAGAGTCTTTGTAGTATCAAATCATGAATCCAGGGTTTCGTTATCTCTCTCAACCCTAGATTATAGATTT
CATCGATCGTCTTCTCTTCATCATCGCGATTTCAATGGAGGGAGTTGGAGGTGCTACGACTACGACGACGTCGTCTGAAGGGAATA
TGATATCAGCAGCAGCGTTTGTGGAAGGGGGAATCCAAGAGGCTTGTGATGATGCTTGTAGCATCTGTCTCGAACCCTTCTGCGAT
TCCGATCCTTCTACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATCCTTGAGTGGTGTCAAAGGAGTTCACAGTGCCC
TATGTGTTGGCAATCTATTAGTCTCAAAGACCCCACTGGTCAGGAATTGCTTGAGGCTGTTGTACAGGAGAGGACTCTCCGCTTCA
ATCCGTCTAGAAACGCCACCATATTTCGCCATCCTACTCTCGGTGATTTTGAATTACAGCATCTCCCAGCGGGGGTGGATAATGCA
GAGATTGAAGAACGCATCATCCAGCACTTGGCTGCTGCTGCTGCTATGGGCCGTGCAAGGCATGGAGCAAGAAGGGAAGGCCACAG
AAGCAGGTCATCGTCAACTCAAGGTGGTCATCCACAGTTCATGGTGTTCTCTCCTCCTCCGCCTTCTCCTCCTCCCATGCTTTCCT
CTCCATCTCAGAGAGACGAGAATGACACAGTCACAAACCTTCCTCACAATGCTTCTGTAGGAGAGGGTTCTATACAGTCAAACATG
CAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33931 unnamed protein product [Thellungiella halophila] | 926 | 8e-098 |
| NP_851051 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana] | 923 | 2e-097 |
| NP_568410 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana] | 922 | 2e-097 |
| BAH19547 AT5G22000 [Arabidopsis thaliana] | 922 | 2e-097 |
| XP_002871983 hypothetical protein ARALYDRAFT_489047 [Arabidopsis lyrata subsp. lyrata] | 920 | 4e-097 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZT42 E3 ubiquitin-protein ligase RHF2A | 927 | 3e-099 |
| Q4TU14 E3 ubiquitin-protein ligase RHF1A | 306 | 3e-027 |
| Q9VE61 E3 ubiquitin-protein ligase CG7694 | 140 | 5e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6TB16 Putative uncharacterized protein | 771 | 5e-080 |
| Q2HT04 Zinc finger, RING-type | 760 | 1e-078 |
| B9GEQ0 Predicted protein | 697 | 2e-071 |
| Q2R2A7 RING-H2 finger protein RHF2a, putative, expressed | 685 | 5e-070 |
| Q2R2A8 Putative uncharacterized protein | 685 | 5e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G22000.2 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding | 927 | 3e-100 |
| AT5G22000.1 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding | 927 | 3e-100 |
| AT5G22000.3 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding | 927 | 3e-100 |
| AT4G14220.1 RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding | 306 | 3e-028 |
| AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein | 141 | 3e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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