RadishBase

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Information for unigene UN26187

FASTA Sequence

Unigene ID: UN26187	Length: 1177		SNP
GGGGCGTTCGTTTCAGGATTCTCTGAGAACTGAGAAGCAAATCGCAGCGGACGACGGTTCTCGGCGTGTATAGGCGTCGCGGTTTA CTTTCTGTTAACGATCGGCTTCTCCTCGGTTACCTGATCACTCCCTCTGTCTACTCTCTCTATCTTCAATCATCAGTCCATCGCTG TCATCTCTCTTTCAAGCTTCTCTGAGTGCGAGTTGGTCAACAGCAGGATACTGTAGCAATACTGAACAAGATGGATCATGAAAATG GATATGGTGTGGAAGTCACTGGGCTATCTCCAGCCGTTACTGAGAAAGATCTCATCGACTTCTTCTCCTTCTCTGGTGCAATCCAA CATATTGATATTGTCAGGTCGGGTGAGCAAGCGTGCACTGCGTATGTGATGTTCAAGGATTCTTACTCTCAGGAAACTGCCGTCTT ACTCAGTGGGGCAACCATATTGGAGCAGCGAGTTTGCATAACTCGTTGGGGACAGCATCACGAGGAGTTTGACTTCTGGAACGCCA CTCAGCGGGGTTTTGTAGATGACACAAACTCACATCCTCATCCCCAACGAGGCGAGTTCAACGCCGGAGAAGCAGTGACAAAAGCT CAAGAAGTGGTGAAGTCAATGCTAGCCACCGGATTCGTGCTGGGCAAAGACGCTTTAGCCAAAGCTAAAGGCTTTGACGAATCCCA CGGTGTATCGGCTGCAGCAGCGGCTAGAGTATCTCAACTAGACCAGAGGATCGGTCTCACTGACAAAATATTTGCCGGAGTTGAAG CTGTCAGACTGACCGACCAGAAGTACCAGGTTTCAGACAAAGCAAAATCAGCCGTCTCTGCTACAGGAAGAACCGCGGCAGCAGCT GCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCTCTCTGGCTATCGGGTGCGTTAGAGCGTGCGGCTAAGGCTGCATC TGATCTTGGTAGCCGTGGCTCAAGGCAGTGATGTGAATAGATACGAACTGATCAGAATCATATACATGCATTTATAAAAAAAACTC CCGACTTCGTACTTGTGTGCACCACCATCCAATAATTAGTTTACCCAATGACCCCTGATTTGATTTGTATGCAAAAATGTTATAAG AAGGGTGAATCTCCTGACTTCAGAAGCGATTTACCTCAGAAGCATATAATTGATTTACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM67095 unknown [Arabidopsis thaliana]	1082	1e-115
NP_563946 RNA recognition motif-containing protein [Arabidopsis thaliana]	1074	9e-115
XP_002890050 hypothetical protein ARALYDRAFT_312432 [Arabidopsis lyrata subsp. lyrata]	1065	1e-113
AAF43934 Contains similarity to Vip1 protein from Schizosaccharomyces pombe gb\|Y13635.1 and contains a RNA recognition motif PF\|00076. EST gb\|AI996906 comes from this gene [Arabidopsis thaliana]	1046	2e-111
XP_002520109 nucleic acid binding protein, putative [Ricinus communis]	831	1e-086

Swiss-Prot top hits (Blast detail)	Score	e value
P87216 Protein vip1	125	4e-006

TrEMBL top hits (Blast detail)	Score	e value
Q8L8V6 Putative uncharacterized protein	1082	7e-116
Q949S4 Putative uncharacterized protein At1g14340	1074	6e-115
Q9M9S8 F14L17.11 protein	1046	1e-111
B9S290 Nucleic acid binding protein, putative	831	9e-087
B7FK95 Putative uncharacterized protein	786	2e-081

Arabidopsis top hits (Blast detail)	Score	e value
AT1G14340.1 RNA recognition motif (RRM)-containing protein	1075	3e-117
AT3G01210.1 nucleic acid binding / oxidoreductase	486	5e-049
AT5G46870.1 RNA recognition motif (RRM)-containing protein	423	1e-041
AT5G32450.1 RNA recognition motif (RRM)-containing protein	405	1e-039
AT1G67950.3 RNA recognition motif (RRM)-containing protein	374	5e-036

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			21%


11	4			21%


9	4			21%


10	5			26%


21	2			11%

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