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Information for unigene UN26245
| FASTA Sequence |
| Unigene ID: UN26245 | Length: 1952 |
| SNP | ACCATAGCTGCAGCCGGTCTCAACGTGGCAGCTCCACGAGCGCTCGTTCGACCGGTGGTGGCTCGTCTATCGTCCCCGGTCCGTCT
GAACTACCCGTGGAAATTCAGTTCGATGAACCGGATGGTTATGTCTGTTAAGGCGACATCGGAGGGAGGGATATCGGATAAGGTGG
AGAAGAGTATTCAGGAAGCGAAGGAGACTTGCGCCGATGATCCAGTGAGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAG
CTGAGTGCGGCTGCGAGTCACGCTAGGGACAAGAAGAAGGCTGGTGGATCCGATCCTTTGGAAGAATATTGCAGTGATAATCCTGA
AACCGATGAGTGTCGTACTTATGATAATTAAAACACTGTTTTAAAAATTTAGGTACTTGTGTCGGATCATCTTTCTTCTTGTTGCT
GTTGTTGTCGTCGTGTATGGTTTGGTTTTGGTTTGTTTTGGTGCTTGTAATGTGATGAATAGTACAAGTGCAATACATATAAAAAA
AAAAAAAAATTTAATTGAAAAAACTCAATATAGATTAGTTATAAATCTATTTCTAATGATTTTCTTATATTATTAGAAATAAAAAA
TGTAAATTTGAATTCAAAAAAGGTCATGAATTTACAGTCAATAGTTAATGGTTCTGATTTGTACTAGATTCTATATTTTGTGACTG
AAAATCTATATTTTTTTCGGAGTTGAAAAAAAAAACAAGAGAAAATTTGAATCTAGTACAAATAATTTTGGCGGCATGGCCGAGTG
GTAAGGCGGGGGACTGCAAATCCTTTTTCCCCAGTTCAAATCCGGGTGCCGCCTCAACAGGAGACTTGAAATCTCCTGTTATAACT
ATAACAAACGTAGGAAAAGACTCTTGATACTTTCTTTTCGTGATTCTAAGCCCCTGGCTCTCGAGGTTCTATTCTCTAACCTAAAG
TTTTACCTATCAGATTAGAGGAAAACTCAAACGAGTGGAGGGAAATACATTAGATTGGATAGGCAGAGAGGGAATTAAATTAATAG
TTTTGGAAAGGACCTAAGATACTTTGGATATAGACTCATGAAAGTGTCGGAATGCTCAAACATTCAATCAATATTAGATTAGATCA
AGAATTGCCTTTCGTTTTACTTCAAATAAAAATAAAAAACGATAAAAGAAAGAAAAAAGATTATTCTTTCTACATATGAGTCAGAT
TCCTTGGATACTTCGAAAAGTATCTGTTTACTTGTGTTTACATCTTGTCGATTCTACTATAAATTCTATAATTAAGAATAACTCAT
TATAAGATAAGTGGATTTTTTAGAGTAGTTCATCAATGGTGACCAAATATCTCTCCCTTTTTTTGACTCTGCACCAGTGATTTCAC
TATTATTAGTGAACAATAATGGAAAAGTTTCTTCATATTCATAGAAATAGGGGACAGAATTCACATGGATATAGTAAGTCTCGCAT
GGGCTGGTTTAATGGTAGTTTTTACATTTTCCCTCTCTCTCGTAGTGTGGGGAAGAAGTGGACTCTAGAAGTACTCCTAATTGCGA
TAATAATCAAACTCTATCAACCTGTATAAATTGTTTTAGTTTTCTAGACCAGCGGCATTGGGGAGAATTCATAACTCCAGGCCTTC
TCTTCCTCTACATTGCTGGATGGATCGGGTGGGTTGGGAGAAGCTACTTGATAGCGATCAGTGATGAGAAGAAACCGGCGATGAAG
GAGATCATTATCGATGTTCCATTGGCTAGTCGTCTCATCTTCCGTGGTTTCATTTGGCCTGTTGCTGCTTACAGAGCGTTAATCAA
CGGCGATCTCATTGCCAAGGATGTCTAGAAAAACAAAAAAACAAATCTATATTTGTTGTTTTGTTTGCTTCTCTTTCTCTCATGTT
TTCCATTGTATGTATTGATATCTCTAATTAACTCTTTCTTCAAAGAATATCTTTGCATTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880299 cp12 domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata] | 578 | 6e-057 |
| NP_566100 CP12 domain-containing protein 1 [Arabidopsis thaliana] | 557 | 2e-054 |
| AAK97687 At2g47400/T8I13.24 [Arabidopsis thaliana] | 546 | 3e-053 |
| ABL97989 putative chloroplast protein CP12 [Brassica rapa] | 459 | 4e-043 |
| BAJ34148 unnamed protein product [Thellungiella halophila] | 447 | 9e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SHE8 Photosystem I reaction center subunit III, chloroplastic | 396 | 3e-037 |
| P13192 Photosystem I reaction center subunit III, chloroplastic | 361 | 4e-033 |
| P12355 Photosystem I reaction center subunit III, chloroplastic | 357 | 1e-032 |
| P46486 Photosystem I reaction center subunit III, chloroplastic | 353 | 3e-032 |
| P31083 Photosystem I reaction center subunit III | 244 | 1e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22914 Putative chloroplast protein CP12 | 557 | 1e-054 |
| Q941E3 At2g47400/T8I13.24 | 546 | 2e-053 |
| A1YMY3 Putative chloroplast protein CP12 | 459 | 3e-043 |
| Q9LZP9 CP12 protein-like protein | 414 | 4e-038 |
| Q8LC81 CP12 protein-like protein | 413 | 5e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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