RadishBase

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Information for unigene UN26369

FASTA Sequence

Unigene ID: UN26369	Length: 837	SSR
GGGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAAAACGATAGTTATCTCTTCTATTCTAGGTATTGCGCCGCTCGGGTT TAGGTTATGGAGCACATAATAGCCACAAGGGAGACAGACGAGTTGGTAGAGCTGGTGATAGCAGCTGAAGAGAAGGGTTTGTCAGG GGAGCACGGAACATGGCTTGAATTTCTAAAATTTTGCGACCCGACAAGGGATTATTTTAACGATCCCCGTAACCGAAAAGCCGAGA CCTTGATCCAATTCCTTACTTCAATCATCAAGACAGACGATTCGAGGAAATTGGCTTTGCTTATGAATCCCAGCCGTCCACTGGTT CGCCGCTACTCATGCAATCACCCGAAAGAGACAGCTGAGCAGAGACTAGTTAGAAAGACGCTTACACATGAGGAGTACCCATTCGA CTTTTTGATCCCGTACAACGCCAAGGACTGGGTCCTTACGGGAATCATAGGGAGCCCCATTGTTGATCCTTTCAACGATCTCGCAG CAGAAATTTCCTACTCTTTCCGCTCAAGGATGCCTTATGCTAAAAGTATTGCCATAACCGACATGATTGCCCTTTGTTGCGAGAAG GTTCTCTGTCAAGACAACACTGAAGCTGCTGTAAGAGTTGCTGCCGTTGACCGCAATCTCAAGGTGATTCTTGATGTGCTTGTCAA ACCAAATGAGCCAGTTATTAACTTCCGGACTAGTATTACCGGACTCGATTGTTTTGCTCTTCATCTATCAAACGCTACTCCTTTGT CGGATATACAGAAAATTGCTGGAATTGTTCTACGAACTATATGGTCGTCACTTCTGACAGATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871167 exonuclease family protein [Arabidopsis lyrata subsp. lyrata]	291	3e-024
NP_196173 small RNA degrading nuclease 2 [Arabidopsis thaliana]	281	5e-023
NP_001119175 small RNA degrading nuclease 2 [Arabidopsis thaliana]	281	5e-023
XP_002873356 hypothetical protein ARALYDRAFT_908789 [Arabidopsis lyrata subsp. lyrata]	203	5e-014
CAB62118 hypothetical protein [Arabidopsis thaliana]	189	2e-012

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FFG1 Small RNA degrading nuclease 2	281	2e-024
Q8RXK2 Small RNA degrading nuclease 3	230	2e-018
A3KPE8 Small RNA degrading nuclease 1	189	1e-013
Q9SN09 Putative small RNA degrading nuclease 4	187	2e-013

TrEMBL top hits (Blast detail)	Score	e value
C0J1J0 Small RNA-degrading nuclease 1	189	2e-012
A5BCN7 Putative uncharacterized protein (Fragment)	170	2e-010
B9SFZ8 Exonuclease, putative	168	4e-010
B8AVK7 Putative uncharacterized protein	148	9e-008
Q0J9I1 Os04g0650600 protein	148	9e-008

Arabidopsis top hits (Blast detail)	Score	e value
AT5G05540.1 SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid binding	281	2e-025
AT5G05540.2 SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid binding	281	2e-025
AT5G67240.1 SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding	230	2e-019
AT3G50100.1 SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3'-5' exonuclease/ exonuclease	189	9e-015
AT3G50090.1 exonuclease family protein	187	2e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	4			80%


10	1			20%

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