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Information for unigene UN26393
| FASTA Sequence |
| Unigene ID: UN26393 | Length: 1393 |
SSR | | GGATGGTCGTCGTCGTCGTCGAAATTCAAAATACACTCAATCAGCGAGCAGAGAAGGGGACTACTAATTCGTTGCGACTTGGAAGA
TGAGGCCGAACATTGTTACCGAGGCTGGGATTCAAACAAGAGTTTCACAGTGGTGGAATGCTATACCTTTCCTCACCTCTTCGGTG
GTTGTGGTTTGCGGGCTCATTTACCTGATTTGCCTCTTAACTGGATACGACACTTTCTACGAAGTCTGCTTCTTACCCTCTGCAAT
TCTATCGCGGTTTCAAGTTTATAGGTTTTACACGGCCATTTTATTCCATGGATCGATGCTTCATGTTATGTTCAACATGATGGCTT
TGGTTCCTATGGGATCTGAGCTGGAGAGAATCATGGGATCTGTCCGCTTGTTTTACCTGACTATTTTGCTGGCAACGACCAATGCC
GTATTGCATCTTCTTATAGCATCGTTGGCGGGATATAACCCTTTCTATCAGTATGACCATCTCATGAATGAGTGCGCGATTGGATT
CTCTGGAATCTTGTTCTCAATGATTGTCATAGAGACAAGTCTCAGTGGAGTCACCTCTAGAAGTGTGTTTGGTCTCTTCAACGTGC
CCGCTAAACTATATCCATGGATCTTATTGATTGCATTCCAGCTTCTCATGACAAATGTTTCGCTGCTTGGTCACCTATGTGGCATC
TTGTCTGGATTTGCATATTCTTATGGCCTTTTCAATTTCTTGATGCCCGGCTCTTCATTTTTCTCCAACATTGAGTCAGCCTCATG
GATGGCTAGCTGTGTAAGGCGACCCAAATTCATTATGTGCACTGGTGGAAATCCTTCCAGTTACATGCCCACAGAGGGAAGCATCT
AATCAATCTTCTGAGGATAGTAGATTTCCGGGAAGAGGTAGAACTCTTAGCGGTACTGCCCGTGATCTAACCCCCCCAGCTGGAGA
AACAAACCCAAACCTCCATGCTAGACTATTGGAAGATAACACTCCAGACCGCCTTTTTGATGCAACTGTGACTGGCATGCCAGAGC
CAATCCCCACCACAAGGTGCCAATAGCAAATGCAGCAGTCCTACCTCAATCCCAGACGCAGGGTCGTGTTGCTGCTTTTGAAGAAC
AAATCCAGAAACTCGTTGCCATGGGCTTTGAAAGGACACAAGTGGAGGTTGCACTTGCTGCTGCAGATGACGATCTAAACGTAGCT
GTGGAGATCTTAATGAGCCAACAGGGCTAACACATACCAAATTGCAAAGTATTGCATTGGAGTGTACTGTAACGTTCGTCTCTCAT
TCCATGTTTTACTTGCATTTAGAAACTGTATAGCGCTCCTGTTTAACCAGATAATCAAACCGGTTTTCCGGTTTAGATTCTATACA
AACGAATGGTTGGATTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567064 rhomboid-like protein 15 [Arabidopsis thaliana] | 1264 | 1e-136 |
| BAH57020 AT3G58460 [Arabidopsis thaliana] | 1264 | 1e-136 |
| XP_002878222 rhomboid family protein [Arabidopsis lyrata subsp. lyrata] | 1263 | 1e-136 |
| AAM65024 unknown [Arabidopsis thaliana] | 1260 | 3e-136 |
| NP_001190126 rhomboid-like protein 15 [Arabidopsis thaliana] | 1223 | 6e-132 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LB17 Uncharacterized protein At3g58460 | 1264 | 5e-138 |
| Q8RXW0 Uncharacterized protein At3g17611 | 212 | 4e-016 |
| O74926 Rhomboid protein 2 | 188 | 3e-013 |
| Q6NTF9 Rhomboid domain-containing protein 2 | 165 | 1e-010 |
| Q8VEK2 Rhomboid domain-containing protein 2 | 156 | 1e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z2U1 AT3G58460 protein | 1264 | 7e-137 |
| B9T029 Rhomboid protein, putative | 1113 | 2e-119 |
| B9H9X7 Predicted protein | 1098 | 1e-117 |
| B4FD10 Putative uncharacterized protein | 1011 | 2e-107 |
| B6TE56 Rhomboid family protein | 1011 | 2e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58460.1 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) | 1264 | 4e-139 |
| AT3G17611.1 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 212 | 4e-017 |
| AT3G59520.1 ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) | 196 | 3e-015 |
| AT3G17611.2 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 161 | 3e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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